Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01220 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGGTGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAAGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTAGATGTAAACACACTGAGAAAAAGTACACTAAAGAAGCCAATAACTGTTGGCATACCTCGCTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCGTCTGAAATGGCTGCTACGAAGAGATCATCAAAATTGTCTAGCTCTTCAAGAATCTCAGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTAATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAATGGTAAAGGGGGACGTGTGGTTGAAATATCCCTGGTTCCAGAGGAAAAGAAATTGATCTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCACCGGGTGAAAGTGCTCATTCTTCTCAGTTGCCCGTTGCGAAAACACAAAAATATATTGAGGTTGCTACTGTGGAATCAAACATCAAACCCACTTTGCCAAGGAAAGTTGGATCCCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACTCCACCATCTATATCTTCTTGCACAATTGGCAAAGTTTTAGAGAAGGAGAAGAAAATTCTTGCAGGAAGTAGGGTAGCAAATAAAGTAACATCATCTAAGGCAGGACGAAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGAAATAAGGTAACCAAGTTATCTAGAAGTGCCTCCCGTTCTGTTAAACCAGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAGCATGTAGTTCGAGCACATACAATGCAGTTAATGGGGATAATGATCCTAGTAAAAGGAAGTTAATATGCGAAAGGTGTCACTGTGCGTTGAATAGTGCAGCTAAAGACTCAAAGAAGGGCTCTGCATCCCAGTTTAGTGGTTTTAGTAGTGATGTAAAAATAACCAATCCAAAATCTGGTGTTAACATATCAGGAATCAATGTGGATGGCAAGGTGTCTGATGTTAAAGTAAATAGAAATACAAGGGTACGAGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACGACGAGTATTATAAGTGATGATAGCAATGGGCATGGATCAAATACTGGTAACAGACCTCATATGTCAAAAGATTTTAGGTGGGAAGCCATACGCCGTGCACAATTGCAGCATGGGGTCCTTAGCTTGCGGCATTTTAATCTTTTAAAGAAGCTTGGTTGTGGGGACATAGGAACAGTGTATCTTGCCGAGCTAAATGATGGCACTCATTGCCTATTTGCCATTAAGGTCATGGACAATGAGTTTCTAGCAAGACGGAAGAAAATGCCAAGAGCACAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAGTTTACTACAGATAATCTATCATGTCTCGTCATGGAGTACTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTTCTGCTTGCTTTGGAGTACTTACACATGCTTGGAGTTATTTATCGAGACTTGAAACCGGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTTTCACTTAGGTGCACGGTCAATCCAACACTCCTGAAGTCGTCTTCCTTCAATGCAGACTTAGTGAAAACATCAGGTCCCTGTAAAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACCTGACCTCACAACACAGTTCAGGTCGTTGCCCCAACTCGTTGCCGAACCCACCGATGCACGTTCGAATTCATTTGTTGGCACTCACGAATATTTGGCTCCTGAGATCATTAAAGGAGAAGGTCATGGAGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTCTACGAGCTTCTGTATGGCAGAACCCCTTTCAAGGGTTCCAACAATGATGAAACATTGACCAATGTAATAATGCAAGGCCTCACTTTTCCCGACACCCCAATTGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAAAATCGTTTTGGGACAGAGAAAGGAGCTGCGGAAATCAAACAGCACCCCTTTTTCGAGGGGCTAAACTGGGCATTGATCCGGTGTGCAGTTCCTCCAGAACTTCCAGACTTATGTGATATGGACATTACAAGTATGATTGCTCAACAAAACAAATTCAGGTATTTGGAAAGTAAGTCCACTGGAGAACACCTTGAGTTTGAATTGTTTTAG 2607 42.27 MGSGTCEIVEAREEIKPVQSKGGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVDVNTLRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAATKRSSKLSSSSRISEAGRIKTLYNSVMVEATESGSSSDNGKGGRVVEISLVPEEKKLIFEKRLEHVQASAVKSPGESAHSSQLPVAKTQKYIEVATVESNIKPTLPRKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVTSSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPACSSSTYNAVNGDNDPSKRKLICERCHCALNSAAKDSKKGSASQFSGFSSDVKITNPKSGVNISGINVDGKVSDVKVNRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSNTGNRPHMSKDFRWEAIRRAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELNDGTHCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTTDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCKDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKPDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNDETLTNVIMQGLTFPDTPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDMDITSMIAQQNKFRYLESKSTGEHLEFELF 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8594012 8598896 + MELO3C024525.2.1 Cme08g01220 335483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01220 868 Gene3D Transferase(Phosphotransferase) domain 1 564 633 - -
Cme08g01220 868 ProSiteProfiles Protein kinase domain profile. 483 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01220 868 Pfam Protein kinase domain 714 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01220 868 Pfam Protein kinase domain 484 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01220 868 PANTHER FLIPPASE KINASE 1-RELATED 3 868 - -
Cme08g01220 868 Gene3D Transferase(Phosphotransferase) domain 1 710 835 - -
Cme08g01220 868 SUPERFAMILY Protein kinase-like (PK-like) 459 835 IPR011009 -
Cme08g01220 868 MobiDBLite consensus disorder prediction 331 347 - -
Cme08g01220 868 MobiDBLite consensus disorder prediction 273 348 - -
Cme08g01220 868 Gene3D Phosphorylase Kinase; domain 1 481 563 - -
Cme08g01220 868 MobiDBLite consensus disorder prediction 411 458 - -
Cme08g01220 868 MobiDBLite consensus disorder prediction 273 313 - -
Cme08g01220 868 MobiDBLite consensus disorder prediction 424 458 - -
Cme08g01220 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Cme08g01220 868 CDD STKc_phototropin_like 481 838 - -
Cme08g01220 868 SMART serkin_6 483 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01220 868 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 868 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01220 Cme-Chr8:8594012 Cme11g01898 Cme-Chr11:27120999 8.13E-132 dispersed
Cme04g01837 Cme-Chr4:26102624 Cme08g01220 Cme-Chr8:8594012 0 transposed
Cme05g00141 Cme-Chr5:958801 Cme08g01220 Cme-Chr8:8594012 2.18E-73 transposed
Cme05g01934 Cme-Chr5:27963316 Cme08g01220 Cme-Chr8:8594012 3.89E-130 transposed
Cme06g00013 Cme-Chr6:92673 Cme08g01220 Cme-Chr8:8594012 0 transposed
Cme07g01422 Cme-Chr7:19932244 Cme08g01220 Cme-Chr8:8594012 2.25E-111 transposed
Cme08g01025 Cme-Chr8:6653770 Cme08g01220 Cme-Chr8:8594012 0 transposed
Cme08g01748 Cme-Chr8:20058730 Cme08g01220 Cme-Chr8:8594012 5.80E-145 transposed
Cme11g01018 Cme-Chr11:14646603 Cme08g01220 Cme-Chr8:8594012 2.77E-108 transposed
Cme12g00788 Cme-Chr12:14316880 Cme08g01220 Cme-Chr8:8594012 0 transposed
Cme01g01842 Cme-Chr1:26077450 Cme08g01220 Cme-Chr8:8594012 2.65E-71 transposed
Cme11g01897 Cme-Chr11:27108962 Cme08g01220 Cme-Chr8:8594012 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65092 PF00069 Pkinase 6.60E-35 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01220 - K08286 csv:101210027 1612.43