Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01227 ATGGAAATGCCTGGACGGAGGTCTGATTACTCTCTTTTAAGCCAAATTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCCTTTTACGACTCCGTAGCAGCTGGGGGAAACGTTATCAAAGGGAGAACCGATAGGGTTTTTGATTGGGATGGGAGTGGTGATCACAGGTTAAACACGCAGGCGTATCGGATAGGGAACCTGTATTCATGGATTGGTTTACAGAGACATTCCAGTGGAAGCAGCTACGATGATAGCTCTCTCTCTAGTGATTACTACGCACCGACGCTATCAAACCCTGCAGCAAATGAGATCAATGCATTGGAATATATCCACGATGATGATTTCCGAGTGATGAAAGCTGTGGGAAGTGGAGGTTCGTCTGGAAAGAGCTGGGCCCAGCAGACGGAAGAGAGCTATCAGTTGCAGCAGGCCTTGGCTCTTAGGCTTTCTTCAGATGCTACTTGTGCTGATGATCCCAACTTTATGGATCCGATTCCAGACGAGGCAGCTTTAAGATCGTTATCGATTTCAGCTGAGGCCATCTCGCATCGGTTCTGGGTAAATGGATGCATGTCATATTTGGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCATATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGGCGTATACCATCATTTGAATCTCTGAAAACAGTTGATTCCAGCATGGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAAGAACTGCAAAACAGGGTGCATAATATTTCTTCCAGTTGTGTAACCCCAAAAGAGGTTGCAGATCATATAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCAGTTTCTGAGGGAGAAGATGACTTGGTTTCTGCCTGGAAGGAATGCAGCGATGACTTAAAGGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTCCTAGCTGATTCAATTGATTTACCCTGTCGAATTGCTAGGGGTTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAGGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCGCTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATCTTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCATTCTCCGTCTATCAAAGGCCATTAAATAGGAAGGATGTAGATGGAAAAACCATAGTGGTTACTGGTGACAAGGACAGAAATTCTCAGTTATTAAATAAAAAAGCAGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTGTTGCTTCTCCATATAGTGTACAGTCGACCCCTTTTGTAGAAAATGTAGTCCCTTTAAGCCATATCTCACACATTGGTTCTGAAGATTCGGAGCATCTCTTAGCATTGTCTCATCCAAGGATGGATCATGCTAACAATTTACCATTTGTTGATGGTAGTCAGTTGATTAGAAAGCCAAATGAGCTTTCCCTTGGCTTAGAAGATTTGGTTATTCCATGGACAGATCTTGATTTGAGGGAGAAAATTGGAGCAGGCACACTAACTCTTTACTTGGTAAATTCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCATGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACATCCAAACATCGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTAACGGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGACCTGGGGCACGTGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAACCCCCCAATTGTTCATCGTGATTTGAAATCACCAAATCTTTTGGTTGATAAGAAGTACACTGTGAAGGTTGGTGCTGAGAAAATCTTGGTTTGTGATTTTGGGCTTTCACGCTTGAAGGCACACACATTTCTTTCGTCAAAATCAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTTCGCGATGAGCCATCAAATGAGAAATCTGATGTTTATAGTTTTGGTGTGATACTATGGGAGCTTGCAACATTGCAGCAACCATGGGGCAACATGAACCCACCGCAGGTTGTGGCTGCTGTGGGTTTCAAAGGAAAAAGGCTCGAGATCCCATGTGATTTAAATCCTCGAGTTGCTACTATCATAGAGGCTTGCTTTGCCAGTGAGCCTTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACACCTCATCAAGTTCGCTCAAACGTATTGATGTTCCACAAGCAGCGTGCGTTGGCGTTTGATTCAAGTAAAAAGAGTATGTTGATTCAGAAGGTAAAAGAGAAGATTATGGCTTACAGG 2685 43.13 MEMPGRRSDYSLLSQIPDEEVGTGASTSFYDSVAAGGNVIKGRTDRVFDWDGSGDHRLNTQAYRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNPAANEINALEYIHDDDFRVMKAVGSGGSSGKSWAQQTEESYQLQQALALRLSSDATCADDPNFMDPIPDEAALRSLSISAEAISHRFWVNGCMSYLEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSMGSSIEVVLIDRHSDASLKELQNRVHNISSSCVTPKEVADHIAKLVCNHLGGSVSEGEDDLVSAWKECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGRPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNLVFDEASSGNVVSGKDAAFSVYQRPLNRKDVDGKTIVVTGDKDRNSQLLNKKAAQLNTQDGKSEQFRSCVASPYSVQSTPFVENVVPLSHISHIGSEDSEHLLALSHPRMDHANNLPFVDGSQLIRKPNELSLGLEDLVIPWTDLDLREKIGAGTLTLYLVNSGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVGAEKILVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNMNPPQVVAAVGFKGKRLEIPCDLNPRVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQVRSNVLMFHKQRALAFDSSKKSMLIQKVKEKIMAYR 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8661616 8670275 - MELO3C024518.2.1 Cme08g01227 335490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01227 895 Pfam Protein tyrosine and serine/threonine kinase 594 848 IPR001245 GO:0004672|GO:0006468
Cme08g01227 895 ProSiteProfiles Protein kinase domain profile. 587 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01227 895 Pfam Ethylene-responsive protein kinase Le-CTR1 179 385 - -
Cme08g01227 895 SMART serkin_6 587 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01227 895 Gene3D Transferase(Phosphotransferase) domain 1 666 862 - -
Cme08g01227 895 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 120 859 - -
Cme08g01227 895 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 120 859 - -
Cme08g01227 895 CDD STKc_MAP3K-like 593 848 - -
Cme08g01227 895 PRINTS Tyrosine kinase catalytic domain signature 756 766 IPR001245 GO:0004672|GO:0006468
Cme08g01227 895 PRINTS Tyrosine kinase catalytic domain signature 819 841 IPR001245 GO:0004672|GO:0006468
Cme08g01227 895 PRINTS Tyrosine kinase catalytic domain signature 661 674 IPR001245 GO:0004672|GO:0006468
Cme08g01227 895 PRINTS Tyrosine kinase catalytic domain signature 702 720 IPR001245 GO:0004672|GO:0006468
Cme08g01227 895 PRINTS Tyrosine kinase catalytic domain signature 775 797 IPR001245 GO:0004672|GO:0006468
Cme08g01227 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Cme08g01227 895 Gene3D Phosphorylase Kinase; domain 1 570 665 - -
Cme08g01227 895 SUPERFAMILY Protein kinase-like (PK-like) 588 848 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02435 Cme08g01227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00232 Cme-Chr4:1823102 Cme08g01227 Cme-Chr8:8661616 3.17E-64 dispersed
Cme08g01227 Cme-Chr8:8661616 Cme12g01838 Cme-Chr12:24732892 1.78E-35 dispersed
Cme11g01627 Cme-Chr11:24135731 Cme08g01227 Cme-Chr8:8661616 1.13E-43 transposed
Cme04g02435 Cme-Chr4:30989682 Cme08g01227 Cme-Chr8:8661616 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65093 PF07714 PK_Tyr_Ser-Thr 8.20E-63 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01227 K14510 - csv:101208800 1600.49