Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01236 ATGCATTCCAATCACTTGCTTCTTGAGGAGCCCATTCGGATGGCTTCCATTTTGGAGCCTTCCAAGGCTAGCTTCTTTCCTACGATGACTAAGATTGTTGGTACTCTGGGTCCTAACTCTCGATCTGTACAAGTTATTTCTGCTTGTTTGACGGCTGGAATGTCGGTTGCTCGGTTCGACTTTTCATGGGGTAGTCCGGATTACCATCAAGAGACTTTGGAAAATTTGAAGATTGCTGTTAAAAGCACCAAGAAACTTTGTGCTGTTATGCTGGATACAGCGGGTCCTGAGGTGTTGGTTGTAAATAGAAGTGAGAAATCTATCTCTCTTCAGGAAGATGGGTTTGTTATTCTAACACCCAATCAAGAACTAGAGGCATCTTCGGAGCTGCTACCTATAAATTATGATGGACTTTCAAAGGTTGTTAAGAAAGGAGACACCCTTTTTCTTGGTCAGTACCTCTTTACTGGAAGTGAAACAACATCTGTCTGGTTGGAGGTTTCTGAAGTGAAAGGAGATGATGTTGTTTGTGTGGTAAAAAACTCTGCCACGTTGGTTGGTACAATGTACACTTTGCATGCTGCTGAAATTCACATTGATCTTCCAACACTTACTGAGAAAGACAAAGAGATCATAGCTACGTGGGGAGTAAAAAACAAGATTGACTTCCTCTCTCTGTCACATGCTAGACATGCGGAAGATGTTCGACAAGCTCGACAATTTCTTTCTAAGCTAGGCGACCTTAACCAAACTCAAATATTCGCAAAGATTGAAAGTGTAGAGGGATTGACCAATTTTGATGAAATACTACAAGAAGCAGATGGTATTATTCTTGCTCGTGGCAATTTGGGGTTAGATCTTCCACCAGAGAAGGTGTTTTTGTTTCAGAAAACTGCCCTTTATAGATGTAATATGGCTGGGAAGCCTGCTGTTTTAACTCGTGTGGTAGACAGCATGACTAACAACTTGAGACCTACACGTGCAGAAGCTACTGATGTTGCCAATGCTGTACTTGATGGAAGTGATGCAATTCTTCTTGGGGCTGAGACATTGCGTGGATTATATCCAGTAGAAACCGTTTCAACCGTTAGTAGAATATGTGCCGAGTCAGAGAAGGTTTTCAATCAAGATTTGTATTTCAAGAAGGCAGTCAAACACATTGGGGAGCCAATGTCACATTTGGAATCTATTGCCTCCTCAGCGGTTAGGGCAGCCATTAAAGTGAAGGCTTCTGTGATTATATGCTTTACTTCGTCTGGAAGGGCTGCTAGATTAATTGCAAAGTATAGGCCAACAATGCCAGTTATATCTGTTGTCGTTCCAAGGTTGAAGACAGATCAACTAAGGTGGAGTCTGAGTGGGGCATTTGAGGCTCGACAATCATTAATTATCAGAGGTCTTTTTCCTGTGCTTGCTGATCCTCAACACCTAGCGGACTCTAACAATGCAACGAATGAGTCTGTTCTGAAGGCTGCTCTAGATCATGGAAAGTCAGCAGGAATCATTAAGGCACATGACCGTGTAGTGGTTTGCCAGAAAGTTGGGGATGCATCAGTAGTAAAGATTATCGAGCTTGAAGATTAA 1584 42.36 MHSNHLLLEEPIRMASILEPSKASFFPTMTKIVGTLGPNSRSVQVISACLTAGMSVARFDFSWGSPDYHQETLENLKIAVKSTKKLCAVMLDTAGPEVLVVNRSEKSISLQEDGFVILTPNQELEASSELLPINYDGLSKVVKKGDTLFLGQYLFTGSETTSVWLEVSEVKGDDVVCVVKNSATLVGTMYTLHAAEIHIDLPTLTEKDKEIIATWGVKNKIDFLSLSHARHAEDVRQARQFLSKLGDLNQTQIFAKIESVEGLTNFDEILQEADGIILARGNLGLDLPPEKVFLFQKTALYRCNMAGKPAVLTRVVDSMTNNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETVSTVSRICAESEKVFNQDLYFKKAVKHIGEPMSHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVVPRLKTDQLRWSLSGAFEARQSLIIRGLFPVLADPQHLADSNNATNESVLKAALDHGKSAGIIKAHDRVVVCQKVGDASVVKIIELED 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8815495 8824601 + MELO3C024508.2.1 Cme08g01236 335499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01236 527 SUPERFAMILY PK beta-barrel domain-like 96 186 IPR011037 -
Cme08g01236 527 PANTHER PYRUVATE KINASE 2 527 - -
Cme08g01236 527 Gene3D - 96 202 IPR015806 GO:0004743|GO:0006096
Cme08g01236 527 Pfam Pyruvate kinase, alpha/beta domain 395 522 IPR015795 -
Cme08g01236 527 Gene3D - 29 370 IPR040442 -
Cme08g01236 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 7 375 IPR015813 GO:0003824
Cme08g01236 527 Gene3D - 371 513 IPR036918 -
Cme08g01236 527 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 SUPERFAMILY PK C-terminal domain-like 358 520 IPR036918 -
Cme08g01236 527 PANTHER PYRUVATE KINASE 2 527 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme08g01236 527 TIGRFAM pyruv_kin: pyruvate kinase 29 516 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02368 Cme-Chr1:32013507 Cme08g01236 Cme-Chr8:8815495 6.70E-45 dispersed
Cme03g01221 Cme-Chr3:21729953 Cme08g01236 Cme-Chr8:8815495 7.44E-112 dispersed
Cme08g01236 Cme-Chr8:8815495 Cme10g00765 Cme-Chr10:4937170 2.47E-136 dispersed
Cme12g01098 Cme-Chr12:18902597 Cme08g01236 Cme-Chr8:8815495 4.04E-20 dispersed
Cme08g01235 Cme-Chr8:8804492 Cme08g01236 Cme-Chr8:8815495 0 tandem
Cme08g01236 Cme-Chr8:8815495 Cme08g01237 Cme-Chr8:8816116 3.80E-19 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01236 K00873 - csv:101206620 1012.29