Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01238 ATGGTTATTAAAGAAGAGACCGATCGATATTCTCAACCTTCTTCGGTCCAACTAGTGATAGAGACAGCGACACGGGTAGCGACCGGGGAAGGCAAGCAAAATATGGCTGGAGGAGTGGATCATCAAAAGAAGAAGAGGTTGAGTCAAGATCAGTTGGAGGCATTGGAGAGAAGCTTTCAAGAAGAAGTAAAGCTTGATCCTGATAGGAAAATGAAGCTTTCAATGGAACTTGGACTTCAACCAAGGCAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGTTGGAAGACCAAGCAACTTGAGCATCTCTATGATACTCTCAAACAACAATTTGATACTATCTCTAAAGAAAAACACAATCTTCAACAAGAGGTGATGAAATTAAGAAACATGCTAAGAGAACAGACAACGAGGAATGCAGGGTCGATGGCTCACACGGACATCTCCGGGGAGGAGACGACGGTAGAGTGCACATCGGTGGAGATTCTGAGCTGTAACAATTACATGTACAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACTTGCCTTCTTATCCTTAG 597 43.89 MVIKEETDRYSQPSSVQLVIETATRVATGEGKQNMAGGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLREQTTRNAGSMAHTDISGEETTVECTSVEILSCNNYMYNVEDFNQISASAPPFWWGAEAAHLPSYP 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8830220 8831612 + MELO3C024507.2.1 Cme08g01238 335501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01238 198 Coils Coil 104 138 - -
Cme08g01238 198 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Cme08g01238 198 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 26 165 - -
Cme08g01238 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 165 IPR045224 GO:0003700
Cme08g01238 198 Pfam Homeobox associated leucine zipper 98 132 IPR003106 GO:0006355|GO:0043565
Cme08g01238 198 ProSitePatterns 'Homeobox' domain signature. 73 96 IPR017970 GO:0000981|GO:0006355
Cme08g01238 198 Gene3D - 39 103 - -
Cme08g01238 198 SMART HOX_1 41 102 IPR001356 GO:0003677
Cme08g01238 198 CDD homeodomain 42 99 IPR001356 GO:0003677
Cme08g01238 198 SUPERFAMILY Homeodomain-like 40 100 IPR009057 -
Cme08g01238 198 PRINTS Lambda-repressor HTH signature 69 78 IPR000047 GO:0003677
Cme08g01238 198 PRINTS Lambda-repressor HTH signature 78 94 IPR000047 GO:0003677
Cme08g01238 198 Pfam Homeodomain 43 96 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02449 Cme08g01238 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00826 Cme-Chr8:5480551 Cme08g01238 Cme-Chr8:8830220 2.76E-27 dispersed
Cme08g01238 Cme-Chr8:8830220 Cme09g00288 Cme-Chr9:2286250 1.01E-29 dispersed
Cme10g00452 Cme-Chr10:2880706 Cme08g01238 Cme-Chr8:8830220 2.04E-22 dispersed
Cme04g02449 Cme-Chr4:31086629 Cme08g01238 Cme-Chr8:8830220 1.44E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41852 PF00046 Homeodomain 1.60E-17 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01238 - - csv:101206385 350.517