Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01240 ATGGATACTAAGAACCAAGAGGAAGATCACACCGACAGCAGCGATTACACGTCGGAGGACGAGGGAAGCGAAGATTACCGCCGTGGAGGTTACCACGCTGTTCGAATTGGCGATACTTTCAAGAATGCTAGATATGTGGTGCAGAGCAAGCTCGGTTGGGGACATTTCTCCACCGTTTGGCTCGCCTGGGACACCCAATCCTCTCGATATGTAGCTCTCAAAGTACAGAAGAGTGCTCAGCACTACACTGAGGCAGCCATGGACGAGATTACAATCCTGAAACAGATTGCTGAGGGAGACCCTGATGATAAAAAATGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGACCTAATGGGCAGCATGTTTGTATGATTTTTGAGTATTTGGGGGATAATCTGTTGACACTAATAAAGTATACTGACTACCGCGGATTACCAATTCATATGGTTAAGGAGATATGTTTTCATATATTGGTTGGCTTAGACTACTTGCATAAACAGCTTTCTATTATACATACTGATTTGAAGCCTGAAAATATTTTGTTACTGTCGATGATTGACCCATCAAAGGATCCTAGAAAATCTGGTATCCCTCTCATTCTTCCAACTAACAAGGACAAGGCTACATTTGAGTCTGGGATTTCAAAAGAGATTAAATTTTCAAATGGAGATATGACTAAACATCATAAGAGAAACATTCGAAGAAAGGCAAAGCAAGCTGCTCAGGGGTGTGTGGAGAAGGAAATGACTGCAGAGGCTGAGACTAATCCAGAAACTTCTTGTACTGTTCAATCATCTCCAAATGCAAAGTCAAGTGCAGGTGCAAATGAGGAAAGACAATCTAGTTCTTTCAATACAAACAGGTCATTGGATGCTGATGGAGCAAAGGGCGACGGAGAAGAAAATCAAGTTGCCAAGAAAGGGAGTCGATTGAGAAAGAAAATGTTATTGGCTTCGGTGGATCTGAATTGCAAGTTGGTTGACTTTGGAAATGCATGTTGGACATACAAACAGTTTACAAATGACATTCAGACTAGACAATATAGGTGCCCAGAAGTTATCCTTGGATCCAAGTACTCTACATCAGCAGATCTTTGGTCCTTTGCATGCATTTGTTTTGAGCTTGCAACTGGTGATGTACTCTTTGATCCTCACAGTGGAGACAACTTCGACAGAGATGAGGACCACTTGGCTTTGATGATGGAACTTCTTGGAATGATGCCACGCAAGATTGCTTTCGGAGGTCGCTATTCTCGAGATTTCTTCAATCGATATGGAAATTTGAGGCACATCCGGAGGTTACGTTTCTGGCCATTAAACAAAGTTCTCATGGAGAAGTATGATTTCAACGAACAAGATGCAAATCAAATGGCAGAATTTCTAGTACCAATTCTTGATTTTGTTCCAGAAAACCGACCCTCTGCAGGTCAATGCCTTCTTCATCCATGGATGAATGCTGGCCCTCGGTTGTTGGAACCATCCCTGAATCCCTCGACTTCTGAGGAGAATAAGAAGGAGAATGAAGATGAGGCAATGGAGGTTAGAATGAGAAAAATTGCCATTACTTCTGATTCTGAACAAGCTAATGATTCCCAGGAGTTCAAGTCCAAAATCAGCAAAGCCAATGCCTGA 1638 42.31 MDTKNQEEDHTDSSDYTSEDEGSEDYRRGGYHAVRIGDTFKNARYVVQSKLGWGHFSTVWLAWDTQSSRYVALKVQKSAQHYTEAAMDEITILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMIFEYLGDNLLTLIKYTDYRGLPIHMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGIPLILPTNKDKATFESGISKEIKFSNGDMTKHHKRNIRRKAKQAAQGCVEKEMTAEAETNPETSCTVQSSPNAKSSAGANEERQSSSFNTNRSLDADGAKGDGEENQVAKKGSRLRKKMLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRYGNLRHIRRLRFWPLNKVLMEKYDFNEQDANQMAEFLVPILDFVPENRPSAGQCLLHPWMNAGPRLLEPSLNPSTSEENKKENEDEAMEVRMRKIAITSDSEQANDSQEFKSKISKANA 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8840591 8843926 + MELO3C024505.2.1 Cme08g01240 335503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01240 545 Pfam Protein kinase domain 319 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01240 545 Pfam Protein kinase domain 45 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01240 545 PANTHER SERINE KINASE-LIKE PROTEIN 12 543 - -
Cme08g01240 545 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Cme08g01240 545 Gene3D Transferase(Phosphotransferase) domain 1 128 487 - -
Cme08g01240 545 MobiDBLite consensus disorder prediction 1 27 - -
Cme08g01240 545 SMART serkin_6 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01240 545 Gene3D Phosphorylase Kinase; domain 1 21 127 - -
Cme08g01240 545 MobiDBLite consensus disorder prediction 501 522 - -
Cme08g01240 545 MobiDBLite consensus disorder prediction 492 545 - -
Cme08g01240 545 MobiDBLite consensus disorder prediction 295 310 - -
Cme08g01240 545 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 543 - -
Cme08g01240 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cme08g01240 545 MobiDBLite consensus disorder prediction 524 545 - -
Cme08g01240 545 ProSiteProfiles Protein kinase domain profile. 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01240 545 MobiDBLite consensus disorder prediction 256 292 - -
Cme08g01240 545 SUPERFAMILY Protein kinase-like (PK-like) 41 497 IPR011009 -
Cme08g01240 545 MobiDBLite consensus disorder prediction 223 310 - -
Cme08g01240 545 CDD STKc_SRPK 34 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00992 Cme-Chr8:6485688 Cme08g01240 Cme-Chr8:8840591 2.87E-172 dispersed
Cme08g01240 Cme-Chr8:8840591 Cme11g01868 Cme-Chr11:26862864 0 dispersed
Cme08g01240 Cme-Chr8:8840591 Cme09g01465 Cme-Chr9:19849599 2.08E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65094 PF00069 Pkinase 6.00E-19 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01240 K08832 - csv:101206384 1084.71