Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01244 ATGGCAGCCATTGTTTCACTCTCTACATACCCCATTTCTGCACCTTCTCTTCTTCCTCCCACCATCTTCTCCCGCTTTCCTTCTATGCCCGCCAATCCTTCTCCTCCAACACCACCACCACATCTATCCAAAACTTCTTTGTCTCTCTGTAACCCAAACCCCTGTCTCCGCCCATTCAATTCCACCTCTCCCACCCAATTCCCCACCTGCCCTCAACACCTTGTCTCTGTTTCAGAACCCCTTTTCGCTTCACGCCCTCTAAACACCTCTCTTTCTACCGTTGCTTCCCCCTTCGACTTGCTTCGCCTATCCACTCGCTACGGTGACCCTGACCTCGCCAGAGCTGTTCATGCTCAGTTTCTCAAGCTCGAGGAAGATATCTTTCTGGGTAATGCTCTAATTTCGGCTTATCTCAAATTGGGACTTGTTCGAGATGCTGATAAAGTCTTTTCTGGCCTTTCTTGTCCTAATGTGGTGTCTTACACTGCGTTGATTTCTGGGTTTTCCAAGTCGAATTGGGAAGATGAGGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCAGGTATTGAGCCGAATGAATATACTTTTGTAGCAATTTTGACTGCTTGTATTCGAAATATGGATTATCAGTTAGGTTTGCAAGTTCATGGTATTGTCGTCAAATTGGGATTCTTGAGTTGTGTTTTCATTTGTAATGCACTTATGGGGTTGTATTGTAAGTGTGGGTTTTTGGGACTTGTACTTAGATTGTTCGAGGAAATGCTTGAGAGAGACATTACTTCATGGAATACTGTTATCTCGAGTTTGGTGAAGGAGTTCAAGTATGATGAAGCGTTCGATTACTTTCGTGGTATGCAGCTATGTAAGGGTCTCAGAGTGGATCATTTCTCTCTTTCTACTCTATTGACTGCTTGTGCTGGTAGTGTTAAACCAATGAAAGGCCAACAACTTCATGCTCTTGCTTTGAAGGTCGGGCTGGAGTCTCATTTGAGCGTGAGCAATTCCCTTATTGGTTTCTATACTAAATGTGGGAGTGCAAATGATGTAAAGGATCTGTTTGAGACAATGCCAATAAGAGATGTTATTACTTGGACAGGAATGATAACGTCATACATGGAATTTGGAATGTTGGATTTGGCAGTCGAAGTTTTTGATAAGATGCCGAAGAGGAATTGCATCTCTTATAATGCTGTTTTGGCAGGACTTTCAAGGAATGGCGACGGGTCTAGAGCTCTGGAACTTTTCATTGAAATGTTAGAGGAGGGTATAGAAATATCAGATTGCACATTGACTAGCATCATCACTGCATGCGGGTTGCTCAAAAGTTTTAAAGTTAGCCAACAGATTCAAGGCTTCGTCGTGAAATTCGGTATTTTGTCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTGTGGAAGGATGGAGGATGCTGAAAAGATGTTTCATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATACTCGAAATGGGAAACTTAATGAAGCGATTTCTCTCTTCCACTCTGGTCAATCTGAAGGAGCCATTGTTATGGATGAAGTTGTGTCGACATCAATACTCTCTCTTTGTGGGAATATAGGCTTTCATGAGATGGGGAAGCAAATGCATTGCCATGCACTTAAATCAGGTCTCATAACTGATACAGGGGTAGGAAATGCAACAGTCAGCATGTACTCAAAGTGCTGGAATATGGATGATGCCGTCCATGTGTTCAATACAATGAACATGCAAGACATTGTTTCTTGGAATGGTTTAGTTGCTGGCCACGTGCTTCATTGGCAGGGTGATAAAGCCTTGGGAATTTGGAAGAAGATGGAAAAGGCAGGAATAAAACCTGACAATATTACGTTTGCTTTGATTATTTCAGCATACAAACACACTGAATTGAATTTAGTTGATAGTTGTCGCAGTTTATTTGTCTCTATGGAAACTGAACACAATATCAAACCCACTTTAGAGCATTATGCCTCCTTCATCAGTGTTTTGGGTCGTTGGGGTCTTCTTGAAGAAGCTGAACAAACAATCAGGAACATGCCTTTTGAACCGGATGTTTATGTCTGGCGTGCTTTGCTTAATAGTTGTAAAATCAACAAAAATGAAAGGCTGGAAAAACTTGCTGTCAGAAACATACTGGCAGTGGAGCCGAAAGATCCGTTTTCTTACATACTTAAGTCCAATCTATACTCTGCATCAGGGAGATGGCACTATTCGGAAAAGGTGAGAGAGGATATGCGAGAGAAAGGGTTCCGGAAGCACCCAAGTCAGAGCTGGATCATTCATGAGAACAAAATTCATTCATTTTATGCCAGAGACAGGTCTCATCCTCAAGTAAAAGACATTTACAGTGGATTAGAGATACTAATCTTAGAATGTTTAAAAATTGGTTATGTTCCGGACACAAGTTTTGTTCTTCAAGAAGTAGAGGAACGCCAAAAGAAGGAATTTTTGTTCTATCACAGTGGAAAATTAGCTGCAACTTTTGGGATTCTAATGACCAAACCGGGAAAGCCTATTCAAATTGTGAAGAATGTCCGTTTGTGTGGAGATTGCCATACCTTCTTGAAATATGTTTCTATTGTCACCAGAAGGAAAATACTTCTTAGGGACACTTCGGGTTTTCATTGCTTTATAGATGGCCAATGCTCATGTACAGATTACTGGTAA 2718 41.43 MAAIVSLSTYPISAPSLLPPTIFSRFPSMPANPSPPTPPPHLSKTSLSLCNPNPCLRPFNSTSPTQFPTCPQHLVSVSEPLFASRPLNTSLSTVASPFDLLRLSTRYGDPDLARAVHAQFLKLEEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSNWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGLQVHGIVVKLGFLSCVFICNALMGLYCKCGFLGLVLRLFEEMLERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLRVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSNSLIGFYTKCGSANDVKDLFETMPIRDVITWTGMITSYMEFGMLDLAVEVFDKMPKRNCISYNAVLAGLSRNGDGSRALELFIEMLEEGIEISDCTLTSIITACGLLKSFKVSQQIQGFVVKFGILSNSCIETALVDMYTRCGRMEDAEKMFHQRSLENDYTAMLTSMICGYTRNGKLNEAISLFHSGQSEGAIVMDEVVSTSILSLCGNIGFHEMGKQMHCHALKSGLITDTGVGNATVSMYSKCWNMDDAVHVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDNITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPFEPDVYVWRALLNSCKINKNERLEKLAVRNILAVEPKDPFSYILKSNLYSASGRWHYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQVKDIYSGLEILILECLKIGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHTFLKYVSIVTRRKILLRDTSGFHCFIDGQCSCTDYW 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8870114 8872831 - MELO3C033153.2.1 Cme08g01244 335507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01244 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Cme08g01244 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cme08g01244 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 390 IPR002885 -
Cme08g01244 905 Pfam E+ motif 782 803 IPR046849 -
Cme08g01244 905 Gene3D Tetratricopeptide repeat domain 217 287 IPR011990 GO:0005515
Cme08g01244 905 Pfam PPR repeat family 596 642 IPR002885 -
Cme08g01244 905 Pfam PPR repeat family 258 306 IPR002885 -
Cme08g01244 905 Pfam PPR repeat family 393 437 IPR002885 -
Cme08g01244 905 Pfam PPR repeat family 156 204 IPR002885 -
Cme08g01244 905 Pfam DYW family of nucleic acid deaminases 813 905 IPR032867 GO:0008270
Cme08g01244 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Cme08g01244 905 Pfam E motif 720 776 IPR046848 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 362 392 IPR002885 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 598 631 IPR002885 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 230 259 IPR002885 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 498 520 IPR002885 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 159 193 IPR002885 -
Cme08g01244 905 TIGRFAM PPR: pentatricopeptide repeat domain 261 293 IPR002885 -
Cme08g01244 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Cme08g01244 905 Gene3D Tetratricopeptide repeat domain 647 778 IPR011990 GO:0005515
Cme08g01244 905 Gene3D Tetratricopeptide repeat domain 84 215 IPR011990 GO:0005515
Cme08g01244 905 Pfam PPR repeat 362 392 IPR002885 -
Cme08g01244 905 Pfam PPR repeat 466 486 IPR002885 -
Cme08g01244 905 Pfam PPR repeat 131 151 IPR002885 -
Cme08g01244 905 Pfam PPR repeat 673 696 IPR002885 -
Cme08g01244 905 Pfam PPR repeat 498 521 IPR002885 -
Cme08g01244 905 Pfam PPR repeat 334 357 IPR002885 -
Cme08g01244 905 Gene3D Tetratricopeptide repeat domain 308 451 IPR011990 GO:0005515
Cme08g01244 905 Gene3D Tetratricopeptide repeat domain 494 646 IPR011990 GO:0005515
Cme08g01244 905 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 427 489 - -
Cme08g01244 905 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 499 891 - -
Cme08g01244 905 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 57 431 - -
Cme08g01244 905 PANTHER OS07G0172600 PROTEIN 57 431 - -
Cme08g01244 905 PANTHER OS07G0172600 PROTEIN 499 891 - -
Cme08g01244 905 PANTHER OS07G0172600 PROTEIN 427 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01244 Cme-Chr8:8870114 Cme06g00977 Cme-Chr6:6937746 3.00E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01244 - - csv:101205681 1711.43