Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01247 ATGGAATCCTTTCTTCTTACCACAAACCCACTTCTGGGTCGAAACTCATCGCTTTCGTCGTTGCCTTCTTCCTCCTCCTCCATCTCAACTCAGCTGAATAGCAAGGTTGAGATCATCAGGAGAAGAATCGAAAAAGTTAACACGACGACAACACATGTGCCTACATCTATCGTTGCCTCATCGGCGTCAAAACGAAAGACGGGTAAGGGGTTGTCTGCAAATGTAGCGGTGGATGGTTCGGTTGCCACGGTAGGGACAGTGAAGGATGTGTCATGGACGGAAGTGCAATATGAATCAGGGTCAATCGGACATAGGGCGCCACCTCCGGCGGAGGTCGATAAAGACAAGCAGATGGAGTATATTACAAAAATATTGGGTTCAAAAGTGTACGATGTTGCTGTTGAAACGCCATTGGAGCTTGCTCCCTTGTTGTCTACTCAAATTGGGATTAATCTCTATCTCAAGAGGGAGGACGCGCAACAGGTATTCTCATTCAAGATTCGAGGGGCTTATAATATGATATCTCAACTTCCTAAAGATCAATTAGCAAATGGAGTTATATGTGCGTCAGCTGGGAATCATGCCCAAGGAGTTGCATTATCTGCTCAACGATTAAAGATTAAAGCCCAAATTGTTATGCCAACAACTACACCAGCAATTAAGGTAGAAGCAGTTAAGAGATTGGGAGGAAAAGTCATCCAGGAAGGTGAAACTTTTGATGAATCGCAAAAAATAGCTAAAGAGATTAGCAGTAGATTGGGCATTACGTTCATACCTCCTTTTGATAATGAAGATGTTATAGCTGGCCAAGGTACTGTTGGCATGGAAATTGGTCGTCAAATGAGGGGTAAAATCCATGCTATCATTGTTCCAATTGGCGGTGGCGGTCTCGCTGCTGGTATTGTTTCTTTTTACAAGCTCGTTTATCCTGAGGTAAAAGTATTTGGGGTGGAACCAAATGATGAAAACTCGATGGCACAAGCGTTGTATCGTGATGAGATAGTGAATGTAACAGATATTGGACATTTTGCTGATGGTGTAGCTGTTCAACAAGTTGGGGATGAAACTTTTCGTATTTGTAGAGAACTCCTTGATGATGTAATTCTTGTTACCAAAGAGGAGATATCTGCCGCAATAAAGGACATGTTTAGCGACGAGAGGAGCATCTTAGAACCTTCCGGTGCACTTTCCATTGCGGCAGCAAAGGCGTATTGCAAGTATAATAATATTACAGGAGTAAATATTGTGGCAGTATGTAGTGGTGCAAATATGAACTTTGATCAATTGCGCGAAATTTCTGATATTGCCAATGTTGATCAGTCTATCATTTGTACTATCTTGCCTGAGACACCTGGAAGCTTACAACAACTTACCGACATGCTGGATGAAGACATCACAGAAATGACATACAGATTTAGCTCTGGCTCACAAGATGCTGTTGTTGTTTACAAAGTTAGTGCTGTAGGTACAGAACTTGAAGATATGGTGGAGATGTTGAACACTGCTGGCTTTACAACTTACACTCTAAATGATAATCCTGTTGTTAAGAATCACCTCCGTTACATGACGGGAGGAAGAGCAGACCTTGAAAACGAAACACTCTTCCGTTTTACATTCCCAGAAAGGAAAGGTGCTTTAAAGCACTTCTTCAAAGACTTTAAGCAGAGCTGGAACGTTTCTTTATTTCACCATCGTGCTCAGGGTATTCTGACTTCAGATGTATTAATTGGAGTTCAATTGGAGAAATCAGAAGAGAAAGATTTCCATGAACATTTAAGGAAAGTTGGGTATAAATATGAAGTAGTCCCTCAAGATGATGCAGCCCAAGTTTTGGCAAAACTCTAG 1845 41.79 MESFLLTTNPLLGRNSSLSSLPSSSSSISTQLNSKVEIIRRRIEKVNTTTTHVPTSIVASSASKRKTGKGLSANVAVDGSVATVGTVKDVSWTEVQYESGSIGHRAPPPAEVDKDKQMEYITKILGSKVYDVAVETPLELAPLLSTQIGINLYLKREDAQQVFSFKIRGAYNMISQLPKDQLANGVICASAGNHAQGVALSAQRLKIKAQIVMPTTTPAIKVEAVKRLGGKVIQEGETFDESQKIAKEISSRLGITFIPPFDNEDVIAGQGTVGMEIGRQMRGKIHAIIVPIGGGGLAAGIVSFYKLVYPEVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGDETFRICRELLDDVILVTKEEISAAIKDMFSDERSILEPSGALSIAAAKAYCKYNNITGVNIVAVCSGANMNFDQLREISDIANVDQSIICTILPETPGSLQQLTDMLDEDITEMTYRFSSGSQDAVVVYKVSAVGTELEDMVEMLNTAGFTTYTLNDNPVVKNHLRYMTGGRADLENETLFRFTFPERKGALKHFFKDFKQSWNVSLFHHRAQGILTSDVLIGVQLEKSEEKDFHEHLRKVGYKYEVVPQDDAAQVLAKL 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8893684 8897886 - MELO3C024499.2.1 Cme08g01247 335510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01247 614 CDD Thr-dehyd 121 425 - -
Cme08g01247 614 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 119 459 IPR036052 -
Cme08g01247 614 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 119 607 IPR005787 GO:0004794|GO:0009097
Cme08g01247 614 SUPERFAMILY ACT-like 442 522 IPR045865 -
Cme08g01247 614 SUPERFAMILY ACT-like 520 609 IPR045865 -
Cme08g01247 614 Pfam Pyridoxal-phosphate dependent enzyme 134 421 IPR001926 -
Cme08g01247 614 ProSiteProfiles ACT-like domain profile. 533 604 IPR001721 -
Cme08g01247 614 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL 72 611 - -
Cme08g01247 614 Gene3D Biosynthetic Threonine Deaminase; Domain 3 440 612 IPR038110 -
Cme08g01247 614 Gene3D - 136 415 IPR036052 -
Cme08g01247 614 Pfam C-terminal regulatory domain of Threonine dehydratase 436 519 IPR001721 -
Cme08g01247 614 Pfam C-terminal regulatory domain of Threonine dehydratase 526 609 IPR001721 -
Cme08g01247 614 Gene3D - 169 260 IPR036052 -
Cme08g01247 614 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 72 611 - -
Cme08g01247 614 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 157 170 IPR000634 GO:0006520|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01247 Cme-Chr8:8893684 Cme08g01251 Cme-Chr8:8956513 2.13E-54 dispersed
Cme08g01247 Cme-Chr8:8893684 Cme08g01250 Cme-Chr8:8952652 5.64E-22 proximal
Cme08g01246 Cme-Chr8:8877572 Cme08g01247 Cme-Chr8:8893684 0 tandem
Cme08g01247 Cme-Chr8:8893684 Cme08g01248 Cme-Chr8:8933907 1.93E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01247 K01754 - csv:101205680 1068.14