Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01252 ATGCGCCTCTTTTTCTGCTTCATCTATGCTTTAGTCTCCGTCGTCGCCGTCGCCGTCGCCGGCACGGCGGCTATCTCCCCCAACCATTTCCTTCTCCACAGAGCCTTCCCCCACTTTCCCTCTCCCCAGTTTCACTCCCTCAAAGCTCGCGACCGCCTCCGCCATTCCCGCCTCTTGCGACGACTCGCTGGTGGCATCGTCAATTTCTCCGTTAAAGGCTCTTCCAATCCTTTCGTCGGGCTGTATTTCACCAAAGTGAAGTTGGGAAATCCTGAGAGGGAATTCAACGTGCAGATCGATACTGGAAGTGACATTTTGTGGGTCACTTGCAGTCCTTGCGATGGCTGTCCTGAAACAAGCGGACTTGGAATTGAACTCAATTTATTTGATACTACAAAGTCGTCCTCTGCTAGGGTTCTTCCCTGCACTGATCCAATATGTGCAGCAGTTTCAACTACTACAGATCAATGCTTATCCCAGATTGACCATTGCAGTTATACCTTCCACTATCGGGATAGAAGTGGAACGTCTGGCTTTTATGTTACTGATTCGATGCATTTTGACATACTTCTGGGGGAGTCAACTATTGCAAATTCATCAGCAACTATTGTTTTTGGGTGCAGCATATATCAGTATGGGGATTTGACTCGGGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCGAGGGGAATTCTCAGTTATTTCACAATTATCTTCTCGAGGGATAACACCTAAAGTATTCTCCCATTGTTTGAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACATTAAATTTACAGAGTATTGCACTCAGTGGGCAACTGTTTCCAAACCCCACCACGTTTCCAATATCAAATGCAGGAGAAACTATTATCGACTCTGGGACAACTTTGGCATACCTTGTGGAAGAAGTTTACGATTGGATTGTCAGTGTGATAACTTCTGCTGTTTCTCAATCAGCCACTCCCACAATTTCGAGGGGTAGCCAATGCTTCAGAGTCTCTACGAGTGTAGCAGAAATATTTCCTGTCCTCAGTTTTAATTTTGAGGGCGTTGCATCCATGGTGGTGACTCCTGAAGAATATCTTCAGTTTGACTCCATAGAACCAGCTTTATGGTGCATCGGTTTTCAGAAAGCTGAGGATGGATTGAACATTTTGGGAGGTTCGTCGTCCGTAAATGTTTCTGTAACATCTGGAAAGGATGTTTTCATCAACGAAGGACAGCTGAGTGTAAGCAGCTCCTCTAGAAAGCATTTCTATCAGCTGCTCAACATTGTTATTGTACTACTAATACATTTAAAACTGTTCTGA 1383 45.12 MRLFFCFIYALVSVVAVAVAGTAAISPNHFLLHRAFPHFPSPQFHSLKARDRLRHSRLLRRLAGGIVNFSVKGSSNPFVGLYFTKVKLGNPEREFNVQIDTGSDILWVTCSPCDGCPETSGLGIELNLFDTTKSSSARVLPCTDPICAAVSTTTDQCLSQIDHCSYTFHYRDRSGTSGFYVTDSMHFDILLGESTIANSSATIVFGCSIYQYGDLTRATKALDGIFGFGRGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIALSGQLFPNPTTFPISNAGETIIDSGTTLAYLVEEVYDWIVSVITSAVSQSATPTISRGSQCFRVSTSVAEIFPVLSFNFEGVASMVVTPEEYLQFDSIEPALWCIGFQKAEDGLNILGGSSSVNVSVTSGKDVFINEGQLSVSSSSRKHFYQLLNIVIVLLIHLKLF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8967410 8973150 - MELO3C024496.2.1 Cme08g01252 335515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01252 460 Gene3D Acid Proteases 66 267 IPR021109 -
Cme08g01252 460 CDD pepsin_A_like_plant 82 410 IPR034161 -
Cme08g01252 460 PANTHER ASPARTYL PROTEASES 7 412 IPR001461 GO:0004190|GO:0006508
Cme08g01252 460 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Cme08g01252 460 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Cme08g01252 460 Pfam Xylanase inhibitor N-terminal 82 266 IPR032861 -
Cme08g01252 460 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 412 - -
Cme08g01252 460 Gene3D Acid Proteases 268 421 IPR021109 -
Cme08g01252 460 ProSiteProfiles Peptidase family A1 domain profile. 82 436 IPR033121 -
Cme08g01252 460 SUPERFAMILY Acid proteases 77 413 IPR021109 -
Cme08g01252 460 Pfam Xylanase inhibitor C-terminal 284 413 IPR032799 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02458 Cme08g01252 CCT
Cme04g02458 Cme08g01252 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00948 Cme-Chr5:13113053 Cme08g01252 Cme-Chr8:8967410 3.09E-75 dispersed
Cme08g01252 Cme-Chr8:8967410 Cme12g01885 Cme-Chr12:25016381 2.34E-30 dispersed
Cme11g01865 Cme-Chr11:26841203 Cme08g01252 Cme-Chr8:8967410 6.85E-144 wgd
Cme04g02458 Cme-Chr4:31136863 Cme08g01252 Cme-Chr8:8967410 1.43E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01252 - - csv:101205203 806.208