Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01253 ATGGCTTCCACTCTCTGTTTTTCCTCTCTCACTTTTCCTTCTTCTTCTCTCCACAAACGAATCCCTCTCACTCCAACAACCCCATTTCCATATCCGTCCATTAAATCCTCCCTTGACGAACGAGGAAACCCCTCCACACCCCCCAAGCTTAAGAACCCCACCAACGCTCCAAAATCCCGTTCCTGGGTCAGCCCTGATTGGCTCACCTCTCTAACTCGCTCCATTACTCTAGGACAGGGTGATGACTCCGGTATCCCCATTGCAACTGCCAAGCTTGATGACGTTTCTGATCTTCTTGGGGGTGCTCTCTTCCTTCCTCTTTTCAAGTGGATGAATGACTATGGACCCATTTATAGACTCGCTGCTGGCCCTAGAAATTTTGTCATTGTCAGTGATCCCGCCATTGCTAAACACGTTCTTCGGAATTATGGGACTTATGCTAAAGGCCTTGTTTCTGAGGTCTCTGAGTTCTTGTTTGGCTCGGGGTTCGCCATTGCAGAAGGCCCTCTCTGGACGGTTCGCCGTAGGGCTGTGGTTCCGTCTCTTCACAAGAAGTACTTATCAGTTATTGTTGATCGGGTATTTTGTAAATGTGCCATGAGATTGGTGGAGAAGCTGGAAAAGGATGCATTAAATAATAATTCAGTCAACATGGAGGAAAAATTTTCTCAACTAACTCTTGATGTTATTGGTCTCTCTGTATTCAACTACAGTTTTGATTCTCTCTCTGCTGACAGCCCTGTGATTGATGCAGTTTACACTGCTTTGAAAGAGGCAGAGGCTCGTTCTACTGATATTTTACCGTATTGGAAGATTAAGGCTCTGTGTAAGATAATCCCAAGACAGATAAAAGCTGAAGAAGCAGTTACGGTAATCAGGAGAACTGTTGAAGAACTCATTGCCAAGTGCAAAGAAATTGTGGAAGCTGAAGGTGAGCGTATCAATGAGGAGGAATATGTGAACGATGCTGATCCGAGCATCCTTCGATTTCTTCTAGCCAGTAGAGAAGAGGTCTCAAGTGTACAACTACGAGATGATCTATTGTCCATGTTGGTTGCTGGACATGAAACTACCGGTTCTGTTCTGACGTGGACCCTTTATCTTTTAAGTAAGCATTCCTCATCATTGGTCAAGGCACAAAATGAAGTTGATAGAGTCTTACAAGGAAGGCCTCCTTCCTATGAAGATACAAAGGAACTTAAATATTTGACACGTTGTATCCTCGAGTCCATGCGACTTTACCCACATCCACCGGTTTTGATAAGAAGAGCTCAAGTTGCTGACACACTCCCCGGAAATTACAAGGTTAATGCTGGTCAAGATATCATGATTTCAGTATATAACATCCATCGCTCTCCCCAGGTTTGGGAACAAGCAGAAGAGTTCATACCAGAAAGATTTGACTTGGAAGGTCCTGTGCCTAATGAAAGCAATACAGATTTCAGATTTATTCCATTCAGTGGTGGGCCTCGAAAGTGCGTCGGCGATCAATTTGCCTTGCTTGAAGCAATCGTTGCACTTGCCATATTCCTACAGCACCTGAATTTCGAGCTGGTTCCGAATCAGACCATTGGGATGACTACTGGAGCAACTATACATACAACAAATGGTTTGTACATGAAACTTAGTCAAAGGAAGCTGACCCCAGAATTAGTTTCACCTGCTACTTCAAGGTAA 1677 44.31 MASTLCFSSLTFPSSSLHKRIPLTPTTPFPYPSIKSSLDERGNPSTPPKLKNPTNAPKSRSWVSPDWLTSLTRSITLGQGDDSGIPIATAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVIVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWTVRRRAVVPSLHKKYLSVIVDRVFCKCAMRLVEKLEKDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLSADSPVIDAVYTALKEAEARSTDILPYWKIKALCKIIPRQIKAEEAVTVIRRTVEELIAKCKEIVEAEGERINEEEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKHSSSLVKAQNEVDRVLQGRPPSYEDTKELKYLTRCILESMRLYPHPPVLIRRAQVADTLPGNYKVNAGQDIMISVYNIHRSPQVWEQAEEFIPERFDLEGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFLQHLNFELVPNQTIGMTTGATIHTTNGLYMKLSQRKLTPELVSPATSR 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8977911 8984894 + MELO3C024495.2.1 Cme08g01253 335516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01253 558 PRINTS E-class P450 group I signature 111 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS E-class P450 group I signature 342 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS E-class P450 group I signature 362 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS E-class P450 group I signature 445 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS E-class P450 group I signature 483 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS E-class P450 group I signature 493 516 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PANTHER CYTOCHROME P450 FAMILY 4 123 545 - -
Cme08g01253 558 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 486 495 IPR017972 GO:0005506|GO:0016705
Cme08g01253 558 MobiDBLite consensus disorder prediction 32 61 - -
Cme08g01253 558 Gene3D Cytochrome P450 90 555 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS P450 superfamily signature 353 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS P450 superfamily signature 405 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS P450 superfamily signature 484 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PRINTS P450 superfamily signature 493 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 SUPERFAMILY Cytochrome P450 99 545 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 Pfam Cytochrome P450 107 528 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g01253 558 PANTHER CAROTENE EPSILON-MONOOXYGENASE, CHLOROPLASTIC 123 545 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01724 Cme-Chr6:19526066 Cme08g01253 Cme-Chr8:8977911 7.81E-162 dispersed
Cme07g01491 Cme-Chr7:20794898 Cme08g01253 Cme-Chr8:8977911 1.27E-129 dispersed
Cme08g01253 Cme-Chr8:8977911 Cme02g00288 Cme-Chr2:2391189 2.73E-40 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01253 K09837 - csv:101204961 1068.53