Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01258 ATGCAAAGGGTATGGGGATTTTTGGTGATTATGTTGTGGGTAATTATAATTGGTGATGCAACAAATGTAGGAGCCACATTGAAATGTGCAGAAGGGCGTAGGCAATTAGGAGGAGGCGCGATGTTTATTAAACAGCATCGTAGGCCGCCGTTTAAGCCCGGCCCTTGGAACCACGCTCATGCTACCTTCTATGAAGGTGGCTCAGGAACTTTTGGTGGTGCGTGTGGGTATGATGACGTAGAAAAGGAAGGGTATGGTATGCAGACGGCGGCGCTGAGCATGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTATGAAATAAAATGCGTGGACGATCCCCAATGGTGCAAGCCTGGACAGCCTTCCCTAATGGTAACGGGCACCAACCACTGCCCCCCCAATTACAACCTCCCCAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCCAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTATCACTTACCGCAGGATTCCATGCAAGAAAGAAGGAGGAATTCGATTTACAATAACCGGAAATCCATATTACAACGAAGTTTTAGTATGGAACGTGGGAGGAGCCGGAGATTTGACGAGTGTCCAAGTGAAGGGTCACCGTAAGCTGAAATGGACACCCATGTCTCGTACGTGGGGTCAAAAATGGACCACCAACGCCATGCTGGTTGGCGAGTCCCTCACCTTTAGGGTTCGAGCCAGTGATGGCAGATTCTCCACTTCGTGGCACGTTGCTCCCCCAACTTGGCAGTTTGGTCAGACCTTCGAAGGCAAAAACTTTAAGTAA 843 50.42 MQRVWGFLVIMLWVIIIGDATNVGATLKCAEGRRQLGGGAMFIKQHRRPPFKPGPWNHAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACYEIKCVDDPQWCKPGQPSLMVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRIPCKKEGGIRFTITGNPYYNEVLVWNVGGAGDLTSVQVKGHRKLKWTPMSRTWGQKWTTNAMLVGESLTFRVRASDGRFSTSWHVAPPTWQFGQTFEGKNFK 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9043115 9045353 - MELO3C024488.2.1 Cme08g01258 335521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01258 280 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 111 122 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 144 161 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 161 174 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Cme08g01258 280 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Cme08g01258 280 PANTHER EXPANSIN-A15 31 280 IPR002963 GO:0009664
Cme08g01258 280 PANTHER EXPANSIN-A32 31 280 - -
Cme08g01258 280 Pfam Lytic transglycolase 89 176 IPR009009 -
Cme08g01258 280 Gene3D - 42 182 IPR036908 -
Cme08g01258 280 SUPERFAMILY Barwin-like endoglucanases 55 204 IPR036908 -
Cme08g01258 280 PRINTS Expansin/Lol pI family signature 55 70 IPR007118 GO:0005576
Cme08g01258 280 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Cme08g01258 280 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Cme08g01258 280 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Cme08g01258 280 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Cme08g01258 280 SUPERFAMILY PHL pollen allergen 183 276 IPR036749 -
Cme08g01258 280 Pfam Expansin C-terminal domain 187 265 IPR007117 -
Cme08g01258 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 186 IPR007112 -
Cme08g01258 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 276 IPR007117 -
Cme08g01258 280 Gene3D - 186 279 IPR036749 -
Cme08g01258 280 SMART dpbb_1 89 176 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01258 Cme-Chr8:9043115 Cme08g02411 Cme-Chr8:30997262 3.96E-113 dispersed
Cme08g01258 Cme-Chr8:9043115 Cme08g01262 Cme-Chr8:9104068 3.31E-34 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01258 - - csv:101204720 562.762