Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01268 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGATTGGCCGAGTTTATTTCCACCTTGATTTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTTAGTAAGCTCACCAATGACGGCGCTGCCACTCCAGCCGGTCTCATCTCCGCCTCCATCGCCCATGCCTTTGCTCTTTTCGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTTAACCCCGCCGTTACCTTTGGTGCCTTCGTTGGCGGTAACATCACCCTCCTACGTGGTATCATCTACTGGATTGCTCAACTCCTCGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGGAGCTTCGGTCTATCAGCAGGAGTTGGTGAACTAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGCTTGGTGTACACGGTGTACGCAACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCCAACATTTTGGCCGGCGGAGCATTCACCGGAGCCTCCATGAACCCCGCCGTGGCATTCGGCCCATCAGTCGTCAGCTGGTCATGGGAAAGCCACTGGGTCTACTGGGCCGGACCTTTGATCGGTGGTGGCCTTGCTGGTCTCATCTACGAATTCATCTTCATTTCCAACTCCCACGAGCAACTCCCAACCACCGACTACTAA 753 54.32 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFGLSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWESHWVYWAGPLIGGGLAGLIYEFIFISNSHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9177803 9179736 + MELO3C024483.2.1 Cme08g01268 335531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01268 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cme08g01268 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Cme08g01268 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g01268 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cme08g01268 250 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Cme08g01268 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02488 Cme08g01268 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01268 Cme-Chr8:9177803 Cme09g01523 Cme-Chr9:20356405 1.94E-51 dispersed
Cme01g02717 Cme-Chr1:34410056 Cme08g01268 Cme-Chr8:9177803 1.74E-97 transposed
Cme03g01738 Cme-Chr3:25963205 Cme08g01268 Cme-Chr8:9177803 1.03E-80 transposed
Cme06g00639 Cme-Chr6:4121946 Cme08g01268 Cme-Chr8:9177803 5.42E-19 transposed
Cme07g02009 Cme-Chr7:25155942 Cme08g01268 Cme-Chr8:9177803 7.14E-24 transposed
Cme09g00564 Cme-Chr9:5803978 Cme08g01268 Cme-Chr8:9177803 5.82E-52 transposed
Cme09g00565 Cme-Chr9:5810542 Cme08g01268 Cme-Chr8:9177803 7.81E-61 transposed
Cme09g01609 Cme-Chr9:20879919 Cme08g01268 Cme-Chr8:9177803 9.53E-103 transposed
Cme12g01777 Cme-Chr12:24357524 Cme08g01268 Cme-Chr8:9177803 1.84E-101 transposed
Cme04g02488 Cme-Chr4:31313855 Cme08g01268 Cme-Chr8:9177803 5.88E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01268 K09873 - csv:101204225 475.707