Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01275 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCCGCTTGCCGCTCCGTGCCGGTGCCACCACCGCCACCGCCGCCGCTCTCAACCTCACTCTCCCTGGCCAGCATCCTAGCCCTGAATTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCTGAGAAAGATGAATCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATAGTCACGGACGATTCCGATGACGATGCAGTAAATCCAAAGCTCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCTGCCAACATGCTCATCAAACTCTCACAGGAACTCATCTTTAACAGCTACAAGACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGTGGTGGCTGCATTACGTTGCAATACATAAGTAATGTCATCATCCACAACATCCATATCCATCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCTATCTTCGGATCGAAGGACATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGATTGATCGATGCGGTGATGGGATCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGTTGTTGGGTCACAGCGACAACTACTGGCCGGATTCCGGTATGCAGGTAACAATAGCATTCAACCACTTCGGAGAAAAGCTAGTGCAAAGGATGCCACGCTGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGCAACCCCACCATAAACAGCCAAGGCAACCGTTACACCGCCCCATACGACCGCAACGCCAAGGAGGTCACCAAGCGAGTCGAAACATCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGAGACATCCTTGTGAACGGCGCCTTCTTCGTCACTTCCGGTCAAGGGCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAGCCGAAGTCCGCGGCGCTGATTGATCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGATAATAATTTGGGGATGTGGACGACCGGCCCCAATGGTAATGGCGGTGGGTTTGGGCTTGGGTCAGGTATGGACTATACTGACGACATGTCGGAGAGTTGTTTTGTTAGGGCTTTTTCTGTTTTGTTGTCTTTTTGTTGGGGATTGGTGGTGGTGATTGCGTTTGTGCTATGA 1446 52.84 MLATTCIVLLALLLPSRLPLRAGATTATAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKLGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDNYWPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGNGGGFGLGSGMDYTDDMSESCFVRAFSVLLSFCWGLVVVIAFVL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9216899 9220288 - MELO3C024477.2.1 Cme08g01275 335538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01275 481 SMART amb_all 153 350 IPR002022 -
Cme08g01275 481 Gene3D - 78 420 IPR012334 -
Cme08g01275 481 PANTHER PECTATE LYASE 18-RELATED 25 439 IPR045032 GO:0030570
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 369 393 IPR018082 -
Cme08g01275 481 PRINTS Pollen allergen Amb family signature 398 421 IPR018082 -
Cme08g01275 481 PANTHER PECTATE LYASE 12-RELATED 25 439 - -
Cme08g01275 481 Pfam Pectate lyase 163 342 IPR002022 -
Cme08g01275 481 SUPERFAMILY Pectin lyase-like 74 401 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01275 Cme-Chr8:9216899 Cme12g01634 Cme-Chr12:23484887 2.52E-179 dispersed
Cme08g01275 Cme-Chr8:9216899 Cme03g01236 Cme-Chr3:21945807 0 transposed
Cme08g01275 Cme-Chr8:9216899 Cme10g00106 Cme-Chr10:731398 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01275 K01728 - csv:101203012 934.095