Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01358 ATGTGGATTTTGGTGGGTCTTTGTTTGCAGTACAAAGCCATTCATCTCTTCTCTTCTTCTTCTCTTTCTCCTTCACCCTCCATTGTTTCCCTTTCAAAAACCCACCTAATTAACCTTCGTATTTCATTTCTCTCTCAAAAATCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTGCTATGGGATCTTCTGTTGCTGCAATGGGCATGGTCCCCGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATTGATAGGAAATTGATTGAAAGACTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGGAGTAAAGCTCTGGAGTTTTTGGGTTATGACCCTGGAAATGGCTCGATTCCTTCTGTTTCATCTAACCATCACCATCATCATCAGGAAGTGGATGTGAATCTTGTAATTACTGATTACTGTATGCCTGAGATGACTGGCTACGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTTTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCCAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACAGGCTTAGACCCCACATGTTAAAAACCAAACTCAAATGTGACAAACTAGAAAGAACATCAGAAGACCACCCTGATTCAAGCCAATCTCAAGCACTAGAACAACAACAACCACGTGAACAAGAACAATCACAACCGCTACTGCAGCAGATCTCGACATCCCTGCAAGATCAAGATCGGATACAATCTGTACCACTTCTGCCAACACCACCACAGGAGCAAGAACAGTTGCAGTTACTCCCACCAACACCGCCTCAACAATCAAACAACAAAAGGAAGGCAATGGAAGATGGACTTTCTCCAGATAGAACAAGGCCTAGATACAATGGAATTACCACCATGGTGTAG 963 42.68 MWILVGLCLQYKAIHLFSSSSLSPSPSIVSLSKTHLINLRISFLSQKSPSSSSSSSSSSAMGSSVAAMGMVPDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNGSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKLERTSEDHPDSSQSQALEQQQPREQEQSQPLLQQISTSLQDQDRIQSVPLLPTPPQEQEQLQLLPPTPPQQSNNKRKAMEDGLSPDRTRPRYNGITTMV 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10713711 10715786 - MELO3C019056.2.1 Cme08g01358 335621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01358 320 MobiDBLite consensus disorder prediction 267 299 - -
Cme08g01358 320 MobiDBLite consensus disorder prediction 219 251 - -
Cme08g01358 320 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 72 318 - -
Cme08g01358 320 CDD REC_typeA_ARR 78 208 - -
Cme08g01358 320 ProSiteProfiles Response regulatory domain profile. 77 213 IPR001789 GO:0000160
Cme08g01358 320 SMART REC_2 76 209 IPR001789 GO:0000160
Cme08g01358 320 MobiDBLite consensus disorder prediction 267 320 - -
Cme08g01358 320 SUPERFAMILY CheY-like 74 217 IPR011006 -
Cme08g01358 320 Gene3D - 77 309 - -
Cme08g01358 320 PANTHER TWO-COMPONENT RESPONSE REGULATOR 72 318 IPR045279 GO:0009736
Cme08g01358 320 MobiDBLite consensus disorder prediction 231 251 - -
Cme08g01358 320 Pfam Response regulator receiver domain 78 204 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02093 Cme08g01358 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01933 Cme-Chr2:25679801 Cme08g01358 Cme-Chr8:10713711 1.09E-50 dispersed
Cme04g00880 Cme-Chr4:11519371 Cme08g01358 Cme-Chr8:10713711 2.93E-17 dispersed
Cme04g02093 Cme-Chr4:28296386 Cme08g01358 Cme-Chr8:10713711 9.01E-74 dispersed
Cme08g01358 Cme-Chr8:10713711 Cme09g01191 Cme-Chr9:16670479 1.20E-69 dispersed
Cme10g01256 Cme-Chr10:13333518 Cme08g01358 Cme-Chr8:10713711 2.68E-12 dispersed
Cme08g01358 Cme-Chr8:10713711 Cme10g00486 Cme-Chr10:3124244 1.03E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41856 PF00072 Response_reg 2.10E-18 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01358 K14492 - csv:101220999 426.402