Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01425 ATGGCTTCAAGACCAATCGTTCCCCAACAAATCAGAGGTGAGGCAGTGATCGGCGGAGGAAAACAAGCAAAGGGCGTGGCTGGAGCAGAGGCAAAGAACCGCCGTGCACTGGGTGATATCGGGAATTTGGTAACTGTTCGAGGAATTGACGCAAAGGCAAATCGCCCTATTACGAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCTCAAGCTGCTGCAAAGGCTGAAAACAACAAGAAACAAGTGCCTGTTAGTATAGATGGGGCTGCTCCCATTCTTGATACTGGTGTTGTGGTTGTAAAGAAAGCAGGAGGTCCCAAGCCAGCTCCTAAGAAAGTCATTATAAAACCAACATCGGAGGTTATTGATATAAGTCCTGACACTGTGGAAAAAGTTGAAAAGAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTTACTTCAGTCTTGACTGCTAGAAGCAAGGCTGCCTGTGGTATAACCAAGAAACCTAAAGAACAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCTGTTGAATATGTTGAGGATATCTACACCTTCTATAAAGAAGCTGAGAACGAGAGCAGACCTCATGATTATATGGATTCACAACCTGAGATAAACCCTTCAATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTTGAACTTTCGCCGGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAGATTGTTCCAAGAAGGGAATTGCAATTACTGGGCATTGGAGCGATGCTTATAGCCTCCAAGTATGAAGAAATTTGGGCGCCAGAGGTAAATGACTTTGTGTGCCTTTCGGATAGAGCTTACACTCATCAACAGATTCTAGTGATGGAGAAGAAGATACTTGGCAAGTTGGAGTGGACCTTGACTGTTCCCACACCATATGTTTTCCTTGCTCGATTTATCAAGGCATCCAAGGACTCGAACCACGAGATGGAAAATCTGGTTTATTTTTTGGCTGAACTTGGAATAATGCATTACAATACGGCAATGATGTATTGCCCGTCGATGATTGCTGCCTCAGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAACACCTGCTTGGGATGAAACCCTAAAGAAGCACACCGGTTTCTCGGAACCGCAGTTAATTGATTGTGCAAAGCTTTTGGTGGGGTTCCATGGGGTAGCAGACAAGAACAAACTTCAAGTAATATACCGAAAATACTCGAGTTCGGAGCGAGGAGCGGTAGCGTTGATTCAGCCAGCCAAAGCTTTGTTGGCTCTAGGCAGTGTCCATTGA 1368 44.88 MASRPIVPQQIRGEAVIGGGKQAKGVAGAEAKNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVSIDGAAPILDTGVVVVKKAGGPKPAPKKVIIKPTSEVIDISPDTVEKVEKKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGITKKPKEQIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINPSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHQQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDETLKKHTGFSEPQLIDCAKLLVGFHGVADKNKLQVIYRKYSSSERGAVALIQPAKALLALGSVH 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12648898 12651559 + MELO3C019115.2.1 Cme08g01425 335688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01425 455 PANTHER CYCLINS 21 450 IPR039361 -
Cme08g01425 455 CDD CYCLIN 324 413 IPR013763 -
Cme08g01425 455 PIRSF Cyclin_A_B_D_E 1 454 IPR039361 -
Cme08g01425 455 CDD CYCLIN 227 316 IPR013763 -
Cme08g01425 455 ProSitePatterns Cyclins signature. 228 259 IPR006671 -
Cme08g01425 455 SMART Cyclin_C_2 326 445 IPR004367 -
Cme08g01425 455 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cme08g01425 455 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cme08g01425 455 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cme08g01425 455 Gene3D - 213 324 - -
Cme08g01425 455 Gene3D - 199 441 - -
Cme08g01425 455 SMART cyclin_7 330 414 IPR013763 -
Cme08g01425 455 SMART cyclin_7 233 317 IPR013763 -
Cme08g01425 455 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cme08g01425 455 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01500 Cme-Chr1:19726006 Cme08g01425 Cme-Chr8:12648898 1.14E-73 dispersed
Cme05g00225 Cme-Chr5:1579347 Cme08g01425 Cme-Chr8:12648898 9.61E-98 dispersed
Cme08g00990 Cme-Chr8:6469717 Cme08g01425 Cme-Chr8:12648898 2.96E-83 dispersed
Cme08g01425 Cme-Chr8:12648898 Cme07g00308 Cme-Chr7:1981391 2.79E-47 dispersed
Cme08g01425 Cme-Chr8:12648898 Cme04g00381 Cme-Chr4:3058212 7.93E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01425 K21777 - csv:101217210 794.653