Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01427 ATGAGGGAAGAACACTCGAATTGGTTTTCTAGATGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCTTCTCCGCCGCTTTCAAATCCGCTCCCTGGTTCTGGCAACGGAATTGTGCCACCAAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACTCTCAAGCGGCCGCGCCTTGTTTGGACGCCTCAACTTCACAAGCGATTTGTTGATGCTGTTGCTCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTTGATGGGTTGACTAGGGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGTGGCGGTGCCGGCGGAGGTGCTGCCTTGGTTGGTTCATCCGATCCGGCCACTGACCATTTATTTGCTAGCTCACCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTTTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCGGCCATACGCAGCTCCAGCCGCCGTATCATCGGCAGGTTGGACATTTTGGGTCGCCGCCAAATGGTCAGTTCGAGCACCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAACATCAGTGCATAATTCTGTTCCTAATTACATCGAGGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 906 52.87 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIVPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGAGGGAALVGSSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGTSVHNSVPNYIEDLESANATGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12670609 12671628 + MELO3C019117.2.1 Cme08g01427 335690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01427 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cme08g01427 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cme08g01427 301 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 301 - -
Cme08g01427 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cme08g01427 301 MobiDBLite consensus disorder prediction 1 91 - -
Cme08g01427 301 Gene3D - 94 156 - -
Cme08g01427 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cme08g01427 301 MobiDBLite consensus disorder prediction 1 18 - -
Cme08g01427 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 301 IPR044841 GO:0003700|GO:0006355
Cme08g01427 301 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02132 Cme-Chr4:28625333 Cme08g01427 Cme-Chr8:12670609 2.62E-122 dispersed
Cme08g01427 Cme-Chr8:12670609 Cme11g01332 Cme-Chr11:20225494 1.06E-36 dispersed
Cme08g01427 Cme-Chr8:12670609 Cme12g00152 Cme-Chr12:1499830 4.22E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41859 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01427 - - csv:101216969 539.265