Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01427 ATGAGGGAAGAACACTCGAATTGGTTTTCTAGATGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCTTCTCCGCCGCTTTCAAATCCGCTCCCTGGTTCTGGCAACGGAATTGTGCCACCAAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACTCTCAAGCGGCCGCGCCTTGTTTGGACGCCTCAACTTCACAAGCGATTTGTTGATGCTGTTGCTCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTTGATGGGTTGACTAGGGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGTGGCGGTGCCGGCGGAGGTGCTGCCTTGGTTGGTTCATCCGATCCGGCCACTGACCATTTATTTGCTAGCTCACCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTTTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCGGCCATACGCAGCTCCAGCCGCCGTATCATCGGCAGGTTGGACATTTTGGGTCGCCGCCAAATGGTCAGTTCGAGCACCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAACATCAGTGCATAATTCTGTTCCTAATTACATCGAGGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 906 52.87 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIVPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGAGGGAALVGSSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGTSVHNSVPNYIEDLESANATGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12670609 12671628 + MELO3C019117.2.1 Cme08g01427 335690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01427 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cme08g01427 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cme08g01427 301 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 301 - -
Cme08g01427 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cme08g01427 301 MobiDBLite consensus disorder prediction 1 91 - -
Cme08g01427 301 Gene3D - 94 156 - -
Cme08g01427 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cme08g01427 301 MobiDBLite consensus disorder prediction 1 18 - -
Cme08g01427 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 301 IPR044841 GO:0003700|GO:0006355
Cme08g01427 301 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01427 - - - csv:101216969 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02132 Cme-Chr4:28625333 Cme08g01427 Cme-Chr8:12670609 2.62E-122 dispersed
Cme08g01427 Cme-Chr8:12670609 Cme11g01332 Cme-Chr11:20225494 1.06E-36 dispersed
Cme08g01427 Cme-Chr8:12670609 Cme12g00152 Cme-Chr12:1499830 4.22E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41859 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cme TF