Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01507 ATGTTTGGCCCCAAACAACAAAACCCTCTTCCCCCAACTCCAAAATCCTCCATGGGTAGAGGCAGAGTTGAGATCAAGAAGATTGAGAATATCAATAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTGTCTGTTCTTTGTGATGCTGAGGTCGCCATTGTTGTCTTCTCCAGTACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTATAGAGGACAGGGCATGGAATTGGATTTTCCTAAAGAGACTTTGGACCACCCAGCACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATTGAAAAGCTAAAGTTAGCATATACGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAGAACTTAGAAAACCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGAGACATTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTCGAGGAGTTTCAGCAGAGAAATAATATACCACGTCAGGAGTCCAGTCCCCTTCAGAGATCCTACTTCTCCGATTCGAAAACTGCTTCTACCAATGAGACTGAGGTCAAGACGGAGGCAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGATTGTCGTTGGATGGTCAACGAAAAAGGAAACGATCGGTTGAAGGTGCCAGCACCGACACAACCTGTAGTGAAGTAGAGTTGGAAGGGGATGCACTTTTAGCAAATGACGAACTCTCTCGTCATTTTGGTATGTAA 819 44.81 MFGPKQQNPLPPTPKSSMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPAQLPPSDSDAKSSEEEIEKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRSQLEEFQQRNNIPRQESSPLQRSYFSDSKTASTNETEVKTEAEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSEVELEGDALLANDELSRHFGM 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14420850 14426903 + MELO3C019192.2.1 Cme08g01507 335770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01507 272 MobiDBLite consensus disorder prediction 182 206 - -
Cme08g01507 272 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 Pfam K-box region 117 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g01507 272 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 242 - -
Cme08g01507 272 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g01507 272 MobiDBLite consensus disorder prediction 182 220 - -
Cme08g01507 272 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 PANTHER - 18 242 - -
Cme08g01507 272 Gene3D - 30 95 IPR036879 GO:0003677|GO:0046983
Cme08g01507 272 MobiDBLite consensus disorder prediction 99 118 - -
Cme08g01507 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 Coils Coil 143 182 - -
Cme08g01507 272 CDD MADS_MEF2_like 19 87 IPR033896 GO:0000977|GO:0045944
Cme08g01507 272 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Cme08g01507 272 MobiDBLite consensus disorder prediction 1 22 - -
Cme08g01507 272 SUPERFAMILY SRF-like 19 88 IPR036879 GO:0003677|GO:0046983
Cme08g01507 272 Coils Coil 113 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01617 Cme-Chr4:23450761 Cme08g01507 Cme-Chr8:14420850 3.72E-36 dispersed
Cme07g02243 Cme-Chr7:26544560 Cme08g01507 Cme-Chr8:14420850 8.79E-31 dispersed
Cme08g01507 Cme-Chr8:14420850 Cme08g00190 Cme-Chr8:1304027 1.87E-39 dispersed
Cme10g00405 Cme-Chr10:2581053 Cme08g01507 Cme-Chr8:14420850 7.82E-17 dispersed
Cme12g01984 Cme-Chr12:25598671 Cme08g01507 Cme-Chr8:14420850 7.98E-18 dispersed
Cme08g01507 Cme-Chr8:14420850 Cme06g00949 Cme-Chr6:6728550 1.38E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41861 PF01486 K-box 4.40E-11 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01507 - - csv:101205930 501.516