Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01532 ATGGCCCCATTTTTCTCCTTCTTCTTTCTCACTACCTTCTCCTTCTTCCTTTCTTTCACTTCCTCTCTCAACTCCGATGGCCTCTCCCTCCTCGCCCTTAAAGCCGCCATTGAATCCGACCCATCTCACGTTCTCGAGTCCTGGTCCGAGTTTGATGCCACCCCATGTCACTGGCCCGGAATCGTCTGCACTCGCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGTCTCACCGGCTACATTCCTTCTGAACTTGGCCTCCTCGATTCCCTCCGTCGTCTCTCCCTCGCCTTCAACAATTTCTCTAAACCCATTCCTTCTCATCTCTACAACGCTACAAATCTCGTCGTTCTAGACCTTTCCCACAATGCTCTCTCAGGCTCGCTCTCCGATCAAATCGGCGATCTGAGGAAGCTTCGCCATCTAGATTTATCCTCGAATGCTCTCAATGGTTCTCTTCCTAATCGACTTACTGACCTAACTGAACTCGTCGGAACTCTCAATTTGTCGTACAATCGATTCTCCGGCGAGGTTCCTCCTTCGTTCGGAAATCTCCCGCTGATCGTGAATCTCGACGTCCGTCACAACAATCTCACCGGAAAAATCCCTCAGGTGGGTTCGCTGTTGAATCAAGGTCCGACGGCATTCTCCGGCAACCCGAGTCTATGTGGGTTTCCGTTACAAACGCCATGTCCAGAAGCTCAGAACCCGAACATCTTTCCAGAAAATCCGCAGAATCCCAAGTCGCTGAACGGCAACTTCCCGGGTTATGGCAGAGGGAGAGAGAGTGGGGGAGGTGGCGTGGCGGGGTCAGCGACTGTGGCAGTGGTATCTTCAATAATTGCATTGGTGGGGGCGGTATCGGTGACGGTGTGGTGGTTCCGGAGGAAGGCGGCAGTGGAGAGGCCAGAGGAGGGCAAAACGGGAAAAGGGAGTCCGGAAGGGGAAAGTTGCGGGGATTTGGAAGGGCAAGATGGTAAATTCGTGGTGATGGATGCAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCATACGTGGTGGGGAAGAGTAGGAGTGGGATTGTGTATAAGGTTGTGGCGGGGAGGGGATCCAGTGCGGGCGCGAGTATTGTAGCTGTAAGGAGACTTAATGATAGCGATGCCACGTTGACGTTTAAGGATTTTGAGAATGAGATCGAGTCCATTGGTAGGATCAACCATCCCAACATCGTACGGTTGAGAGCTTATTACTATGCAAGTGATGAGAAATTGCTTGTCACTGATTTTATCAAAAATGGAAGCTTGCACACTGTCCTACACGGAAGTCCTAGTTCTTTGTTACCTCTGCCATGGGCTGCAAGGTTAAAAATTGCTCAAGGAGCTGCACGGGGTTTGGCATACATTCATGAATTTGGTGCTCGAAAATACGTACATGGAAACATTAAATCAACAAAAATCCTTCTTGACGACGATTTTGAGCCTTACATTTCAGGGTTTGGACTGGGTCGTCTTGGCCAAGGAGTACCTAAGTTCCCTGCAACTTCGTCCAAGAAGTTAAGCTCAAACCAAAATATGATTAGCTCAATCATGGGGCCAAGCATTTCAATTCCCTCTGCAATGTATTTGGCACCCGAGATTCGGGTGTTTGGAGGGAAGTACACACAGAAATGTGACGTGTACTCGTTCGGCATTGTGCTTTTAGAACTTTTGAGTGGTAAATTGCCGGATGCAGGATCGGAAAATGATGGGAAGGGGTTGGAATATTTCGTGAGAAAGGCGTTTCAAGAAGAGCGTCCCTTGACTGAGGTTATAGACCAGGCGCTTGTGCCTGAGATTTATGCAAAGAAACAAGTGGTTTCGATGTTCCACATTGCACTGAATTGCACAGAGCTTGATCCCGAGCTGCGTCCGAGAATGAGAACGATATCAGAGAGTCTCGATCGAGTAAAATCTCAGTGA 1950 49.38 MAPFFSFFFLTTFSFFLSFTSSLNSDGLSLLALKAAIESDPSHVLESWSEFDATPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLSLAFNNFSKPIPSHLYNATNLVVLDLSHNALSGSLSDQIGDLRKLRHLDLSSNALNGSLPNRLTDLTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNIFPENPQNPKSLNGNFPGYGRGRESGGGGVAGSATVAVVSSIIALVGAVSVTVWWFRRKAAVERPEEGKTGKGSPEGESCGDLEGQDGKFVVMDAGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSSAGASIVAVRRLNDSDATLTFKDFENEIESIGRINHPNIVRLRAYYYASDEKLLVTDFIKNGSLHTVLHGSPSSLLPLPWAARLKIAQGAARGLAYIHEFGARKYVHGNIKSTKILLDDDFEPYISGFGLGRLGQGVPKFPATSSKKLSSNQNMISSIMGPSISIPSAMYLAPEIRVFGGKYTQKCDVYSFGIVLLELLSGKLPDAGSENDGKGLEYFVRKAFQEERPLTEVIDQALVPEIYAKKQVVSMFHIALNCTELDPELRPRMRTISESLDRVKSQ 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14833270 14838925 - MELO3C023183.2.1 Cme08g01532 335795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01532 649 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cme08g01532 649 Gene3D Transferase(Phosphotransferase) domain 1 427 649 - -
Cme08g01532 649 SUPERFAMILY L domain-like 25 229 - -
Cme08g01532 649 Gene3D Ribonuclease Inhibitor 167 234 IPR032675 -
Cme08g01532 649 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 12 649 - -
Cme08g01532 649 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Cme08g01532 649 PRINTS Leucine-rich repeat signature 116 129 - -
Cme08g01532 649 PRINTS Leucine-rich repeat signature 137 150 - -
Cme08g01532 649 Gene3D Phosphorylase Kinase; domain 1 329 426 - -
Cme08g01532 649 Pfam Protein tyrosine and serine/threonine kinase 351 643 IPR001245 GO:0004672|GO:0006468
Cme08g01532 649 Gene3D Ribonuclease Inhibitor 23 166 IPR032675 -
Cme08g01532 649 ProSiteProfiles Protein kinase domain profile. 345 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01532 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 649 - -
Cme08g01532 649 SUPERFAMILY Protein kinase-like (PK-like) 350 643 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01532 Cme-Chr8:14833270 Cme10g00646 Cme-Chr10:4122792 6.65E-167 dispersed
Cme08g01532 Cme-Chr8:14833270 Cme10g00230 Cme-Chr10:1531870 1.09E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65097 PF07714 PK_Tyr_Ser-Thr 5.60E-27 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01532 - - csv:101212426 1148.27