Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01607 ATGGCCTTTTTGTGTTTTCGTCATCTCTCCATTTTCCTTCTTGTTGGGCTTCTTTCAAATTCCCAATTCTTGGGAGCTCAGCTTGATGATCAAATCACTATGTCCACCATTAGAGAGGAGCTTCAAGTTCCTGGGTGGAGCTCTAGCATCTCTGAGTACTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCACTTAGAGGTAATTTAACTATGATTTCTGAGCTCAGAGCTTTGAAATGGCTTGACCTATCCTACAATGACTTCCACGGCGAGATTCCGTTGAGTTTTGCAAAGTTACCGGAGCTCGAATTCCTTGATTTGTCTGTGAACAAGTTTGATGGTTCGATTCCGCCTCAGTTTGGTGATCTCAAGAACCTCAAATCATTGAACCTCTCCAATAATTTGTTGGTGGGAGAAATTCCAGATGAACTTCAAGGCTTAGAGAAGTTGCAAGATTTTCAAATTTCTAGCAACAGGTTGAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGAGTCATCTAAGAGTCTTTACAGCCTATGAGAATAACTTTGGTGGTGTAATTCCGGATAATCTCGGTTCAGTTTCTGAGCTCCAAGTATTGAATCTGCATACAAACAGGCTTGAAGGCTTGATTCCTCGAAGCATTTTTGCTTCAGGGAAGCTTGAGACTTTGGTTCTTACACAAAACAGATTGACTGGCAATCTTCCTGAAGAGATTGGGAACTGCCAAAGGCTTACTAGTGTTCGAATCGGTAACAATAATCTTGTTGGTGTGATTCCTCCAGCCATTGGAAATGTTACAAGTCTTGCTTACTTTGAAGTGGATAACAATCACCTTTCGGGCGATATAGCGTCTCAGTTTTCGAGGTGCTCCAATCTTACTCTGCTGAATCTAGCCTCGAACGGATTCACTGGGCTGATTCCCCCTGAACTTGGAGAGCTCATGAATCTGCAGGAGCTTATTCTTTCTGGTAATAGTCTGTATGGTGACATTCCGAGATCAATGCTCGAATGCAAGAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGTACTATTCCCTCAGATATATGCAATATATCAAGATTGCAGTACTTACTTTTGGAACAGAATTCAATAAAAGGAGAGATACCTAATGAGATTGGAAAATGTACGAAGCTTCTAGACCTGCGACTTGGTAGTAACTATCTAACTGGAAGCATCCCTTCCGAGATTGGTCGTATTAAGAACTTACAGATAGCTTTGAACCTGAGCTTCAATCATCTAAATGGACCAGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTACTTTAGATTTATCAAACAATCATCTCTCAGGCGATATCCCTTCGGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACAGGTTCAATTCCTTTCTTTGTTCCATTCCAGAAAAGTGCAAATTCTAGTTTTCTGGGGAACGAAGGCCTTTGCGGGGCACCACTAAGCATTACGTGTAAGAATTCTATTGGTCCATACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGTCTGTCATCGGTTCCGGTCTGGCAGTTTTTGTATCAGTTACTATAGTTGTCTTACTTTTTGTGATGAAGGAAAAGCAGGAAAAAGCAGCAAAATCTTCTGGGACTGCAGATGATGAAACTATCAACGACCAACCACCGATAATAGCAGGAAATGTCTTCGACGACAATCTCCAACAGGAAATAGATCTTGATGCAGTCGTTAAAGCAACTTTGAAGGATTCAAACAAGCTCATCTTTGGGACTTTTAGTACTGTTTATAAGGCGATTATGCCTTCGGGTATGATCGTATCAGTTAAGAGATTAAAATCCATGGACAAGACTATTATTCATCATCAAAGCAAAATGATTAGAGAACTTGAAAGGCTTGGTAAACTGAACCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAGGATGTGGCTCTGTTGCTTCACAATTACTTATCCAATGGAACATTGGCTCAGCTTCTTCATGAATCCCCAAAACAACCTGAATATGAACCTGATTGGCCCACGAGATTTTCCATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTTCTTCATCATGTGGCCATAATTCATCTTGATATTTCATCATCTAATATTTTTTTAGATGCCAACTTCAAACCTTTGGTTGGAGAAGTAGAGATCTCAAAACTTTTAGATCCATCAAAAGGAACTGCAAGTATTAGTGCTGTTGCAGGTTCATTTGGCTACATTCCACCAGAATATGCTTATACAATGCAAGTTACAGCCCCGGGAAACGTCTATAGCTATGGTGTCATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATAGTGCTCCCTCGAGGGGTGAAACACCCGAACAGATACTCGATTCCCGGCTGAGCACGGTTTCATTTGGATGGAGGAAGGAGATGCTTGCCGCTCTCAAAATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAAGTGGTGGAAATGCTTTTGGAGATCAAGCAAATTTGA 2679 41.02 MAFLCFRHLSIFLLVGLLSNSQFLGAQLDDQITMSTIREELQVPGWSSSISEYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTMISELRALKWLDLSYNDFHGEIPLSFAKLPELEFLDLSVNKFDGSIPPQFGDLKNLKSLNLSNNLLVGEIPDELQGLEKLQDFQISSNRLNGSIPSWVGNLSHLRVFTAYENNFGGVIPDNLGSVSELQVLNLHTNRLEGLIPRSIFASGKLETLVLTQNRLTGNLPEEIGNCQRLTSVRIGNNNLVGVIPPAIGNVTSLAYFEVDNNHLSGDIASQFSRCSNLTLLNLASNGFTGLIPPELGELMNLQELILSGNSLYGDIPRSMLECKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVTLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGAPLSITCKNSIGPYNQDYHHKVSYKIILSVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTADDETINDQPPIIAGNVFDDNLQQEIDLDAVVKATLKDSNKLIFGTFSTVYKAIMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLNHANLLQLIGYVIYEDVALLLHNYLSNGTLAQLLHESPKQPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNIFLDANFKPLVGEVEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQI 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16561844 16565644 + MELO3C023128.2.1 Cme08g01607 335870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01607 892 Pfam Leucine rich repeat 282 341 IPR001611 GO:0005515
Cme08g01607 892 Pfam Leucine rich repeat 132 173 IPR001611 GO:0005515
Cme08g01607 892 CDD STKc_IRAK 620 889 - -
Cme08g01607 892 Gene3D Ribonuclease Inhibitor 171 231 IPR032675 -
Cme08g01607 892 Gene3D Ribonuclease Inhibitor 232 522 IPR032675 -
Cme08g01607 892 Gene3D Transferase(Phosphotransferase) domain 1 690 892 - -
Cme08g01607 892 ProSitePatterns Tyrosine protein kinases specific active-site signature. 734 746 IPR008266 GO:0004672|GO:0006468
Cme08g01607 892 SUPERFAMILY RNI-like 118 489 - -
Cme08g01607 892 Gene3D Phosphorylase Kinase; domain 1 580 689 - -
Cme08g01607 892 ProSiteProfiles Protein kinase domain profile. 611 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01607 892 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515
Cme08g01607 892 Gene3D Ribonuclease Inhibitor 27 170 IPR032675 -
Cme08g01607 892 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 888 - -
Cme08g01607 892 SMART LRR_typ_2 160 184 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 88 111 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 376 400 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 328 352 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 136 159 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 208 232 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 449 472 IPR003591 -
Cme08g01607 892 SMART LRR_typ_2 112 135 IPR003591 -
Cme08g01607 892 SUPERFAMILY Protein kinase-like (PK-like) 613 887 IPR011009 -
Cme08g01607 892 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 888 - -
Cme08g01607 892 Pfam Protein kinase domain 615 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00735 Cme-Chr1:7228150 Cme08g01607 Cme-Chr8:16561844 3.33E-160 dispersed
Cme08g01607 Cme-Chr8:16561844 Cme06g00416 Cme-Chr6:2671497 1.30E-80 dispersed
Cme10g01254 Cme-Chr10:13287124 Cme08g01607 Cme-Chr8:16561844 6.69E-125 dispersed
Cme08g01607 Cme-Chr8:16561844 Cme05g00654 Cme-Chr5:7055603 1.36E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65098 PF00069 Pkinase 1.40E-27 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01607 - - csv:101215786 1702.18