Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01616 ATGGGAACCCCGGAATTCCCTAATCTCGGAAAGCATTGCAACTTTGCAGTATGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCAGATAGACGGGATGTCACGGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGATCCAAATATTACTTGGGAGATACATGTAAACACTGAATGTGACCCATCGAATTATGATAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTGGCTGCAGGGAATTGCTAACATTTTCAAACACGATCAAGTGTCGGGACTGCTCATTAGACCATTGTTTGAAACATCGGTTTGGACCTGATCATAAATGTCTTGGTCCGAGAAAACTTGAACCAACAGGTTTTCCATTTGTTGGTCTATTAAATAGAAGTAGAAAAGAAGAGAAAGGGCCTAAGAAAGCATTGCCGACCGCATCCTCCTCCAAGTGGACTGCGTTCCTTAATGCAGCCTCATCTGTGAAAGCCTCAGCTGAGGCGAGCATGACGAAGTTGTCGAATGAATTGAGTCAAACTTGGATATCATCGGGTAGCAGCAGCAATGGTGTAGGTGGAAATGGACAAGTTGAGCAATGTCCACAATGCAGCGCTAAGTTTTCATCAGTTTCATCGTTAATAGACCATGTTGAAAAGGTTCATGAAAGGGGTGGAAATCGAACTGGGGCGAAGAAGGTTGTGATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTGTTGACCCTGTTGCCCTTGTGGAGCATATTGAGAGGGATCACGGTGGCACTTCGAGAGCTTGA 870 44.6 MGTPEFPNLGKHCNFAVCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCSLDHCLKHRFGPDHKCLGPRKLEPTGFPFVGLLNRSRKEEKGPKKALPTASSSKWTAFLNAASSVKASAEASMTKLSNELSQTWISSGSSSNGVGGNGQVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16670255 16672980 - MELO3C023120.2.1 Cme08g01616 335879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01616 289 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Cme08g01616 289 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Cme08g01616 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 245 IPR013087 -
Cme08g01616 289 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Cme08g01616 289 Gene3D - 81 147 IPR035896 -
Cme08g01616 289 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Cme08g01616 289 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Cme08g01616 289 Pfam C2H2-type zinc finger 223 245 - -
Cme08g01616 289 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 289 - -
Cme08g01616 289 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Cme08g01616 289 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Cme08g01616 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 289 - -
Cme08g01616 289 SMART c2h2final6 222 245 IPR013087 -
Cme08g01616 289 SMART c2h2final6 260 283 IPR013087 -
Cme08g01616 289 Pfam AN1-like Zinc finger 101 138 IPR000058 GO:0008270
Cme08g01616 289 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Cme08g01616 289 Gene3D Classic Zinc Finger 186 288 - -
Cme08g01616 289 Gene3D - 2 58 IPR035896 -
Cme08g01616 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 288 IPR013087 -
Cme08g01616 289 SUPERFAMILY AN1-like Zinc finger 93 142 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01926 Cme-Chr4:26983043 Cme08g01616 Cme-Chr8:16670255 7.08E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41863 PF01428 zf-AN1 7.20E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01616 - - csv:101212256 584.334