Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01623 ATGGAGGTCGATACTAATCCTGGGAAACCGTCTAAACAGATTGGGGGCGGCCAGGTTTGTCAGATCTGCAGTGATTCCGTTGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACTAAATACAAGTGGCATAAAGTTCTTGAACATTTGATGGTAATGGGATGGATCGGAAGTCCTCCTGTTAATGGGGAGGCAGTAGAAGATGGTGATGGCAATGGAGTGGGAGGGGCACAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAGGAGGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTGTCGGCTGCATCTCCGGAGCGGCTGTCCATGGCCTCTCCTGAAAGCGGGAGCCGAGCTAACTATAGAATCATGGATCAATCAAGAGACTCGGGTTCGGCTAGGTTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGTGCAGATTTTGATGCCAGCACTGATGTAGTGATCGATGATTCTTTACTAAATGACGAAGCTCGCCAGCCTCTATCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTACAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATTACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAGTGGCTCCCGGTTAATCGTGAGACATATCTTGATAGGCTTGCTCTAAGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACTGCCAATACGGTCCTATCAATTCTTTCTGTGGACTATCCAGTTGATAAAGTTTCTTGCTACGTGTCTGACGATGGAGCTGCTATGTTAACATTTGAAGCTTTGTCCGAAACCTCAGAATTTGCTAGAAAATGGGTTCCCTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTCCAACCATCATTTGTGAAGGAGCGGAGAGCAATGAAGAGAGAATACGAGGAGTTTAAAATTCGTATTAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACCCCATGGCCTGGAAATAACACAAGAGATCATCCTGGAATGATACAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGATGGTAACGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCTCTTGTTCGTGTATCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAGGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCAGTTTATGTGGGAACAGGATGTGTTTTCAATCGAACTGCGTTGTACGGCTATGAGCCCCCTCTCAAGTCCAAGCATAAAAAACCAGGGGTATTCTCCAGTTGCTTTGGGAAATCGAAAAAGAAAAGTTCTAAATCAAAAAGAAAGGATTCTGACAAGAAGCAATCTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTTGAAGATATTGAGGAAGGAGTTGAAGTCTTCTTGATGTCTGTACGCAAGTCTAACGTTCTACTTTGCACCTTGAAATGGGGTACTAATTTCCATATATCATCCAATCCAGGTGCTGGGTTTGATGACGAGAAATCACTACTAATGTCGCAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGCGTGCCGCAATCTGCCACTCCAGAATCTCTCCTTAAAGAAGCGATTCATGTCATCAGTTGTGGATACGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCCGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGCTGGAGATCAATCTATTGCATCCCAGACCGTCCTGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGTCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTAGAGAGATTTGCTTATGTTAACACAACCATTTATCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCCATATGTTTACTCACTGGAAAGTTTATCATTCCTCAGATCAGCAACCTTGCTAGCATCTGGTTCATCTCTCTCTTTCTTTCCATCTTTGCTACCGGTATTCTGGAAATGAGATGGAGTGGTGTTGGAATTGATGAATGGTGGAGAAACGAACAATTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTTGCTGTCTTCCAAGGTCTTCTTAAAGTTCTTGCGGGAATTGACACAAACTTCACGGTTACTTCGAAAGCATCCGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGTTATCAATCTTGGGGACCCCTTTTCGGCAAACTGTTCTTTGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACAATTGTGGTTGTATGGTCTATCCTCCTTGCCTCAATCTTCTCTCTTTTATGGGTTCGGATCGATCCCTTCACAACTCGGGTAACTGGTCCTGATGTCGAACAGTGTGGAATCAACTGCTAA 3270 44.4 MEVDTNPGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKVLEHLMVMGWIGSPPVNGEAVEDGDGNGVGGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKSKHKKPGVFSSCFGKSKKKSSKSKRKDSDKKQSSKNVDPTVPIFNLEDIEEGVEVFLMSVRKSNVLLCTLKWGTNFHISSNPGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16699527 16705549 - MELO3C023114.2.1 Cme08g01623 335886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01623 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Cme08g01623 1089 PANTHER CELLULOSE SYNTHASE 16 682 - -
Cme08g01623 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 495 620 IPR029044 -
Cme08g01623 1089 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Cme08g01623 1089 PANTHER CELLULOSE SYNTHASE 688 1089 - -
Cme08g01623 1089 Pfam Cellulose synthase 713 1082 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme08g01623 1089 Pfam Cellulose synthase 333 683 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme08g01623 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 470 624 IPR029044 -
Cme08g01623 1089 SUPERFAMILY RING/U-box 9 74 - -
Cme08g01623 1089 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Cme08g01623 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 688 1089 - -
Cme08g01623 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 16 682 - -
Cme08g01623 1089 MobiDBLite consensus disorder prediction 638 665 - -
Cme08g01623 1089 Pfam Zinc-binding RING-finger 10 73 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02470 Cme-Chr1:32861258 Cme08g01623 Cme-Chr8:16699527 0 dispersed
Cme04g00397 Cme-Chr4:3163759 Cme08g01623 Cme-Chr8:16699527 0 dispersed
Cme05g01222 Cme-Chr5:19790598 Cme08g01623 Cme-Chr8:16699527 0 dispersed
Cme08g01044 Cme-Chr8:6767285 Cme08g01623 Cme-Chr8:16699527 0 dispersed
Cme08g01623 Cme-Chr8:16699527 Cme11g02396 Cme-Chr11:30838713 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01623 K10999 - csv:101211779 2103.56