Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01634 ATGGAGGCTGGAGTGAGTGATAATAATAATAATAGAAATGAGGAGAAGAAGTTGGAATCATGGCCGCCGTGGAAGGCGGAGAGTGAGATTAGAATGAGAAAGTCAACGACGGCGCCGTTTCTGATGAAGACTTACCGGATGGTGGAGGATCCAGGGACGGACGACGTGATATCGTGGAACAGCGACGGCACGGCGTTTGTGGTTTGGCAGACGGCGGAATTTGCTAAAGATATTTTGCCAAAGCTCTTTAAGCATTCCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGGATTTCGGAAAGTGACGACAACTAGGTGGGAGTTTTGCAATGAGAAATTTCAAAAGGGTGAAAAGAAAAAGCTTTGTGAAATACAAAGAAGAAAGAAATGGTCGAACAAGCAACAACATGGGGTAGATGAAGATCGAAGATCCACCTCATCAAACTCATCATCTTCACAGTACAATACTCTGATGGATGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGTTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGAGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGAGAGGCAAAGCTGTTTGGAGTAA 636 42.14 MEAGVSDNNNNRNEEKKLESWPPWKAESEIRMRKSTTAPFLMKTYRMVEDPGTDDVISWNSDGTAFVVWQTAEFAKDILPKLFKHSNFSSFVRQLNTYGFRKVTTTRWEFCNEKFQKGEKKKLCEIQRRKKWSNKQQHGVDEDRRSTSSNSSSSQYNTLMDENKRLKKENGALSSELASMKNKCKELFDLVATYENISKKEDEDERQSCLE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17059288 17062687 + MELO3C023104.2.1 Cme08g01634 335897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01634 211 ProSitePatterns HSF-type DNA-binding domain signature. 79 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g01634 211 Pfam HSF-type DNA-binding 40 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g01634 211 Gene3D - 32 130 IPR036388 -
Cme08g01634 211 Coils Coil 156 183 - -
Cme08g01634 211 MobiDBLite consensus disorder prediction 1 22 - -
Cme08g01634 211 SMART hsfneu3 36 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g01634 211 MobiDBLite consensus disorder prediction 146 160 - -
Cme08g01634 211 PRINTS Heat shock factor (HSF) domain signature 40 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g01634 211 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g01634 211 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g01634 211 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 208 IPR027725 -
Cme08g01634 211 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 29 208 - -
Cme08g01634 211 SUPERFAMILY Winged helix DNA-binding domain 37 129 IPR036390 -
Cme08g01634 211 MobiDBLite consensus disorder prediction 134 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01634 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101214829 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02057 Cme-Chr4:27960171 Cme08g01634 Cme-Chr8:17059288 2.22E-73 dispersed
Cme08g00568 Cme-Chr8:3586724 Cme08g01634 Cme-Chr8:17059288 1.34E-48 dispersed
Cme08g01634 Cme-Chr8:17059288 Cme04g02434 Cme-Chr4:30977962 8.36E-39 dispersed
Cme08g01634 Cme-Chr8:17059288 Cme09g01727 Cme-Chr9:21878183 4.48E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003188 2 2 1 0 0 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 2 2 2 3 1 1 2 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41864 PF00447 HSF_DNA-bind 7.80E-34 CL0123 Cme TF