Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01673 ATGGCTTCCCCCTTCAAACCCCCATTGTTGCTCTCTTTGGCCTTCGCTTTCTTCATTTTGGGTTCTTCTTCATCTGAGGAACCGACCCTTTTGACCTTTAAAGCCTTCATTAAAGATTCAACAAACTCTCTTTCGAATTGGGTTTCTTCTTCTCATACCCATTTCTGTAATTGGACTGGAATTGCTTGTATCACCTCCTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTCTGAACCTTTCTGGGGAAATTTCATCTTCCATTTGTGAACTCCCTCGTTTGGCTCATCTTAATCTTGCTGATAATCGATTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGGACGATCCCAGATCAGATTTCTCTGTTTAGTTCTTTGCGAGTGCTTGATTTTGGGAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAAGACTCTACAAATTCTCAATCTAAGAAGCAACTTGATTTCTGGTACAGTGCCTTCTCTTGTTTTTCATAATCTGACTGAACTTCTTGTCGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGAAATTCCTAGTGAGATTGGGAAGCTTGAGAAACTTGAGGAGTTATTGCTTCATAGCTCTGGTTTCTATGGTGAAATCCCTTCGTCTTTGTTGGGCTTGAGAAGTTTGAGTGTTTTGGATCTTTCTCAGAACAATCTCACTGGGAAAATCCCCGAAATGTTGGGTTCTTCTTTGAAAAACTTGGTGTACTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAAGCCTTGTGAGTTTTAGTGTTCATACCAATTTTTTCACAGGAAGTTTGCCTAATTCCTTGAACCAATGCTTGAATCTTGAAAGGTTTCAAGTTCAGAATAATGGGTTTTCTGGGGGTTTTCCTAAAGCTTTGTGGTCATTACCTAAGATTAAGCTCATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCAATGGCTGCTCAACTTGAGCAAGTTCAGCTCGATAACAACAGCTTTTCAAGTAAAATTCCCCTGGGTCTTGGGTCGATTCAAAGCTTATATCGATTCTCTGTGTCGCTCAATCGCTTTTATGGTGAATTGCCACCAAACTTCTGTGATTCACCATTAATGAGTATAATTAATCTGTCACATAATTCTCTTTCTGGTCGAATTCCCGAGCCGAAAAACTGTAAGAAACTGGTCTCTTTGTCCTTAGCTGGCAATAGTCTTACTGGAGGAATTCCCACTTCCCTTGCAAATCTACCTGTGTTAACCTATCTTGATCTTTCTGATAACAATCTCACTGGTTCAATTCCTCAAGGACTCGAAAACTTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCGATTATCGGGCGCTGTTCCATTTTCTTTGATTTCGGGGCTACCAGCTTCATTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCATGGCCATCCAACAAACCATATGTATGGACTTAACAAAATGGCATGTGCTCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTTTGTATTATCGATCCAACAGACCGAAATCCCGACTCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGTGAGCATGAGTTGGTCATAGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCGAGCCGTGAACTGATCGCTGTAAAGAAACTTGTTAATTTTGGGAGTCGTTCGTGGAAGTCGTTGAAAGCTGAGGTCAAGACATTGGCCAAGATTAGACACAAAAACATCATCAAAATTCTGGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTACGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGATTGAGAATTGCCATTGAGGTTGCTCAAGGAATAGCGTACATTCACAAAGACTATGTCCCACATTTACTTCATCGAAACGTCAAGTCGTCGAACATTCTCCTGGATGCCGACTTTGTCCCAAAACTCACGGATTTTGCTCTTCACCATATCGTTGGAGAGTCGGCATTTCACTCAACAGTAGCTTCGGAATCTTCTCATTCCTGCTATATTGCACCAGAATATAAATACAACAAAAAAGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAACTCTTGACTGGTAGGCAAGCCGAGCGATTGGAATCAACAGAGGACTCTCTCGATGTCGTTCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTCTCAGAACATTCTCGACAACAGATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTTTGATACCTGAAAAACGACCTTCGATGCTCGAAGTCGCCAAGGCCCTTCAACTGATCAGCTCGACAACGAACCTTCACGATGCAACCTTCTTGGGAGTCAAAGATGTTCAAATCCTTCATTTTGAAGAAAGTGTTGGTTGGAGCGATGTGAGAATATGTTATGTTGGAGATGATGATGATGATGATGATTCTGAAGGCAAAGAAATTGGAAGTGTTTGTGCGAAAGAGTGCTCAAACGGAGATAGAGACCAGGAGGCGGCAGCAATGGAATCTCCTAATGTGGATCTTCCCACCACGGACAAAGAAATCGTACCGGAGAAGATTGAGGATGAAGAGATCAAAGAGCCTTTCATTCATTGCGAGCTTTGCGATGCAGAAATTGTTCATAAACTTGCTCAGGTTCTTCTTCCTGGATTGTCCACCGCTTGTGTCGATAATACCAGTGGCGATATCTTTCGAACCCCTGGTTCGGTGGCTGCCGATATCAGGAAAGAAATGGTGGATTATCTTACAATGAGGAGCGAAACTTGCGTTGCCGAATCTGTAATTTTAGATAATCCCTCAGAAGCTGAGGTATCTGATCACCCTTACGACATTGTCTCTGATTTTGTTGATGATTTTGCTGCTACCAAGAGAAATTTGTTTAGTAGAGTTTCAGGATGGATTCTAAGTGAGAAAAGAGAGGATAAGATAGATGATTTTGTTCAAGAAATGGATGTTAATGGCTTTTGGCCACTTGATAGGAGAGAAGCAATTGCTCAAACTTTGCTTAAGAATGTAGATTTTAAGAGTGAGTTTCATTGTGATAAGAAATTTCACTCTGTAGAAGAACTAGCTGAGCATGTTGAAAACTGTGGCTTTAGGTCTTTAACTTGCACAAATGAAGGCTGTACTTCAAGATTTTGTGCAAGCCACGCAGAACAGCATGATTCCATTTGCCCCTTCAAGATAATTTTATGTGAACAGAAGTGTTCTGCCTTTATTATGAGACGTGAAATGGACCGCCATTGCATTACTGTTTGTCCAATGAAGCTTGTGAATTGCCCGTTCCATAATTTGGGTTGCCAATCCCCTGTTCCGTATTGTTTGATAGCGCAACATTGTTCAGAGAGTTTTGATTCTCATTTGCTCCACATTCTTCACTCTATACACAAGGAAGCCAATGAAGAGACTCTTATACATAGACGACAACAGCTTGAAGAGACATCATCACTTGACCACCTTAGAGGTCTTCAAAACTTGAGATTGTTAACCTTGAAAATCAAAGAAATGGAATCTCAGCTAGGACCATTAGTAGTCATCTGCAAGGTCGAGGAGGATAGCTCTGACAAAAGTGACGAAGAGAAGGAGGCTTCTAATGTAACTGAAGAGGCCAAGGATGCTGCCTCTAATGTAATCCAAGAAAGGAAGGAGGAAATGCCTAATGGAAGTGAAGAAACAAAAGATGGCTCAATTGGAACTGAAGAAGAAAGGAAAGATGCATCTACTACTGCAATTGAAGAAAGGGAAGTCATCATGTCTAGTGTAATTGAAGAAACGAAAGACACTTCTAAGACAACCGAAGAAATGAAGGACGCTTCTGACAAAAAAGAAGAAGCCAATGATGCTTCTAGTGAAAAACAAGAAACGAAGGACGCTTCTGACAAAAAAGAAGAAGCCAGCAATGTTTCTAATGAAAATGAAGAAACAAGGGACGCTTCTGACAAAAAAGAAGCCAGTGATGCTTCTAGTGAAAAAGAAGAAACGAAGGATGCTTCTGAGAAAAAAGAAGAAGCCAGTGATGCTTCTAGTGAAAAAGAAGAAACAAATGATACTTCAAATGAAAAAGAAACAAAAGATTTATCGAATTCAACTGAAGAAACAAATGATGGTTCTAATGCAAAGGGAAAGATGAAGGATGATTCGGATTCAGAGGAAGAAATGAAGAATGCTTCTGATGTAAAGGAGGAAGAAATGAAGAATAAAGATTCTGATTCAGAGGAAGAAAATAAGTATGATTCAGCAAAGGAGGAAGAAGTGAAGAAAGAAATTGAAGAAAGTGAGGAGGAAGAAAAGAAAGATGCTTTAAATGTAGTAAAAGATGATCAAGATGAAGCTGAAAGATAA 4653 40.66 MASPFKPPLLLSLAFAFFILGSSSSEEPTLLTFKAFIKDSTNSLSNWVSSSHTHFCNWTGIACITSSSPSLLSVSAIDLQGLNLSGEISSSICELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFSSLRVLDFGKNHIEGKIPEGIGALKTLQILNLRSNLISGTVPSLVFHNLTELLVVDLSENSYLLSEIPSEIGKLEKLEELLLHSSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKIPEMLGSSLKNLVYFDVSENKLVGSFPNGFCSGKSLVSFSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGGFPKALWSLPKIKLIRAENNGFSGEIPESISMAAQLEQVQLDNNSFSSKIPLGLGSIQSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLANLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNRLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSHGHPTNHMYGLNKMACALISLACVLGVLSLAAGFILYYRSNRPKSRLDNWHSVYFYPLRISEHELVIGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGIAYIHKDYVPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGESAFHSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELLTGRQAERLESTEDSLDVVQWVRRKVNIANGASQVLDPSVSEHSRQQMLEALDIALQCTSLIPEKRPSMLEVAKALQLISSTTNLHDATFLGVKDVQILHFEESVGWSDVRICYVGDDDDDDDSEGKEIGSVCAKECSNGDRDQEAAAMESPNVDLPTTDKEIVPEKIEDEEIKEPFIHCELCDAEIVHKLAQVLLPGLSTACVDNTSGDIFRTPGSVAADIRKEMVDYLTMRSETCVAESVILDNPSEAEVSDHPYDIVSDFVDDFAATKRNLFSRVSGWILSEKREDKIDDFVQEMDVNGFWPLDRREAIAQTLLKNVDFKSEFHCDKKFHSVEELAEHVENCGFRSLTCTNEGCTSRFCASHAEQHDSICPFKIILCEQKCSAFIMRREMDRHCITVCPMKLVNCPFHNLGCQSPVPYCLIAQHCSESFDSHLLHILHSIHKEANEETLIHRRQQLEETSSLDHLRGLQNLRLLTLKIKEMESQLGPLVVICKVEEDSSDKSDEEKEASNVTEEAKDAASNVIQERKEEMPNGSEETKDGSIGTEEERKDASTTAIEEREVIMSSVIEETKDTSKTTEEMKDASDKKEEANDASSEKQETKDASDKKEEASNVSNENEETRDASDKKEASDASSEKEETKDASEKKEEASDASSEKEETNDTSNEKETKDLSNSTEETNDGSNAKGKMKDDSDSEEEMKNASDVKEEEMKNKDSDSEEENKYDSAKEEEVKKEIEESEEEEKKDALNVVKDDQDEAER 1550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18402399 18409773 - MELO3C009074.2.1 Cme08g01673 335936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01673 1550 SUPERFAMILY Protein kinase-like (PK-like) 605 875 IPR011009 -
Cme08g01673 1550 ProSiteProfiles Zinc finger TRAF-type profile. 1158 1209 IPR001293 GO:0008270
Cme08g01673 1550 Gene3D Transferase(Phosphotransferase) domain 1 673 883 - -
Cme08g01673 1550 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Cme08g01673 1550 Coils Coil 1293 1313 - -
Cme08g01673 1550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1157 1222 IPR013083 -
Cme08g01673 1550 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cme08g01673 1550 Coils Coil 1365 1415 - -
Cme08g01673 1550 Pfam TRAF-type zinc finger 1158 1216 IPR001293 GO:0008270
Cme08g01673 1550 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 875 - -
Cme08g01673 1550 Gene3D Phosphorylase Kinase; domain 1 603 672 - -
Cme08g01673 1550 Gene3D Ribonuclease Inhibitor 187 263 IPR032675 -
Cme08g01673 1550 Pfam Protein kinase domain 605 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01673 1550 Gene3D Ribonuclease Inhibitor 264 528 IPR032675 -
Cme08g01673 1550 PANTHER OSJNBB0022F23.6 PROTEIN 8 875 - -
Cme08g01673 1550 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515
Cme08g01673 1550 MobiDBLite consensus disorder prediction 1474 1550 - -
Cme08g01673 1550 ProSiteProfiles Protein kinase domain profile. 596 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01673 1550 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Cme08g01673 1550 Coils Coil 1421 1454 - -
Cme08g01673 1550 MobiDBLite consensus disorder prediction 1288 1550 - -
Cme08g01673 1550 Pfam Leucine rich repeat 435 493 IPR001611 GO:0005515
Cme08g01673 1550 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Cme08g01673 1550 SMART LRR_typ_2 266 290 IPR003591 -
Cme08g01673 1550 SMART LRR_typ_2 241 265 IPR003591 -
Cme08g01673 1550 SMART LRR_typ_2 192 217 IPR003591 -
Cme08g01673 1550 SMART LRR_typ_2 95 119 IPR003591 -
Cme08g01673 1550 SMART LRR_typ_2 167 191 IPR003591 -
Cme08g01673 1550 SMART LRR_typ_2 120 143 IPR003591 -
Cme08g01673 1550 SMART LRR_typ_2 457 481 IPR003591 -
Cme08g01673 1550 MobiDBLite consensus disorder prediction 1288 1466 - -
Cme08g01673 1550 SUPERFAMILY L domain-like 26 305 - -
Cme08g01673 1550 SUPERFAMILY L domain-like 205 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00838 Cme-Chr6:5717563 Cme08g01673 Cme-Chr8:18402399 8.18E-06 dispersed
Cme08g01673 Cme-Chr8:18402399 Cme04g00945 Cme-Chr4:12717183 8.27E-27 dispersed
Cme08g01673 Cme-Chr8:18402399 Cme04g00205 Cme-Chr4:1506131 1.27E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65100 PF00069 Pkinase 2.80E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01673 - - csv:101222175 1646.71