Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01721 ATGTCTCACAATTGCTTCTCTTACCCCTGCCCAACCCCGACACCTCCTCCGCCTTCGTCTCCTCCTCTCCGAGAGGCTCTGCCGCTTCTCGGGTTGATGTCTCCACCCGAGCAGCGACAGGAGCAAGAAGAAGACGACGACGAAGATGGTGGGGGTAGGAGAGGCAGCAACAACGAGGAGGAGGAGTCAGTGACGGTAGCTTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATAGCAATAATAGTAACAATAATATTCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATTCTTATTGGTCCTACCCAATTCTCGTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCATGGGTCACAGTATAGAAAAGGCCCCGAATCCCTCCGAGGCACGCAGCCAACAGGCATGCTACGGCTTCCTTGCTACTGCTGTGCACCGGGCTGCCGCAACAACATAGACCACCCACGAGCCAAGCCATTGAAAGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCACGGTCTGAAGCCCTTCATGTGTAGAAAGTGCGGGAAGGCATTCGCAGTGCGTGGAGATTGGCGGACGCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGTTCGGATTTCAAACACAAGCGCTCCCTAAAGGACCATGTCAAGGCCTTCGGTAATGATCACGCCGCGTACGGTGGGGGCGGGATCGATGGGTTTGGAGACGAGGAAGATGAGCCTGCTTCTGAAGTAGAGCAGGATAATGATGAGTGA 909 51.71 MSHNCFSYPCPTPTPPPPSSPPLREALPLLGLMSPPEQRQEQEEDDDEDGGGRRGSNNEEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNNSNNNIQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19518035 19520944 + MELO3C009030.2.1 Cme08g01721 335984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01721 302 PANTHER ZINC FINGER PROTEIN WIP2 17 301 IPR043584 GO:0003700|GO:0010468
Cme08g01721 302 MobiDBLite consensus disorder prediction 284 302 - -
Cme08g01721 302 SMART c2h2final6 139 161 IPR013087 -
Cme08g01721 302 SMART c2h2final6 223 243 IPR013087 -
Cme08g01721 302 MobiDBLite consensus disorder prediction 9 24 - -
Cme08g01721 302 MobiDBLite consensus disorder prediction 280 302 - -
Cme08g01721 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 243 IPR013087 -
Cme08g01721 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Cme08g01721 302 SUPERFAMILY beta-beta-alpha zinc fingers 205 243 IPR036236 -
Cme08g01721 302 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Cme08g01721 302 MobiDBLite consensus disorder prediction 89 109 - -
Cme08g01721 302 SUPERFAMILY beta-beta-alpha zinc fingers 135 161 IPR036236 -
Cme08g01721 302 MobiDBLite consensus disorder prediction 1 64 - -
Cme08g01721 302 Gene3D Classic Zinc Finger 201 276 - -
Cme08g01721 302 Gene3D Classic Zinc Finger 138 161 - -
Cme08g01721 302 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 17 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02478 Cme-Chr1:32921653 Cme08g01721 Cme-Chr8:19518035 3.63E-110 dispersed
Cme05g00148 Cme-Chr5:1007240 Cme08g01721 Cme-Chr8:19518035 8.91E-87 dispersed
Cme05g00149 Cme-Chr5:1009691 Cme08g01721 Cme-Chr8:19518035 2.69E-26 dispersed
Cme08g01721 Cme-Chr8:19518035 Cme12g00615 Cme-Chr12:11101277 8.24E-106 dispersed
Cme08g01721 Cme-Chr8:19518035 Cme04g02208 Cme-Chr4:29302073 1.12E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41865 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01721 - - csv:101209947 554.288