Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01743 ATGCTACTGCGGGAAATTTCACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGTTGTATCTAGCTTTTGATTATGCTGAACATGATCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTATACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAATTATCTCCATAGTAATTGGATTATTCACCGCGATTTAAAGCCGTCAAATATTTTGGTTATGGGTGAAGGAGAAGAGCAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATTTGAAAATGGAGTGGTTGTCACCATTTGGTATAGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTACACTAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGCCTCCGAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACGATTGAGAAATGGCCAACACTTGCTAATCTTCCAAATTGGCAACAAGATGTACAGCACATTCAGGGGCATAAATATGACAATGCTGGATTATATAATGTTGTACACCTGTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTACTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTTCCAAACCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTCGAGGGAACAACCAGCCTTCAACCCTCACAAACGGTAACATCTGGAAATGCTGTAAACATGCAAGGTGGTCATATGGCAAGATCAGTCCCTCGGGCAATGGGAGTCGGCATGCCGAGGATGCCGCATCAGGGCATGGCTGCCTATAATCTTGCTTCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTTTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGCCAGGTTATCCTCCCCAGCAGAAACAACAAAGACGTTACTGA 1185 44.14 MLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLFENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGPPNPFQLDQLDKIFKVLGHPTIEKWPTLANLPNWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPNQPGEKVINYPTRPVDTTTDFEGTTSLQPSQTVTSGNAVNMQGGHMARSVPRAMGVGMPRMPHQGMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMPGYPPQQKQQRRY 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19974335 19989355 + MELO3C009014.2.1 Cme08g01743 336006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01743 394 CDD STKc_CDK8_like 1 259 - -
Cme08g01743 394 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01743 394 PANTHER CYCLIN-DEPENDENT KINASE E-1 1 388 - -
Cme08g01743 394 MobiDBLite consensus disorder prediction 354 394 - -
Cme08g01743 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Cme08g01743 394 Gene3D Transferase(Phosphotransferase) domain 1 30 270 - -
Cme08g01743 394 MobiDBLite consensus disorder prediction 294 314 - -
Cme08g01743 394 SMART serkin_6 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01743 394 PANTHER CELL DIVISION PROTEIN KINASE 1 388 - -
Cme08g01743 394 MobiDBLite consensus disorder prediction 358 372 - -
Cme08g01743 394 SUPERFAMILY Protein kinase-like (PK-like) 2 260 IPR011009 -
Cme08g01743 394 Gene3D Phosphorylase Kinase; domain 1 1 29 - -
Cme08g01743 394 Pfam Protein kinase domain 2 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01160 Cme-Chr7:15323843 Cme08g01743 Cme-Chr8:19974335 1.54E-12 dispersed
Cme08g01743 Cme-Chr8:19974335 Cme10g00639 Cme-Chr10:4065775 1.18E-64 dispersed
Cme08g01743 Cme-Chr8:19974335 Cme03g02180 Cme-Chr3:28832662 5.50E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65102 PF00069 Pkinase 1.60E-57 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01743 K02208 - csv:101203984 803.897