Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01835 ATGGGGAGAGTTAAATTGCAAATCAAGAGAATTGAAAATACAACTAATCGGCAAGTAACTTTTTCGAAACGAAGAAATGGACTCATCAAGAAGGCTTATGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGTCTCAGCCAGTTCTCCGGCCGCCGCAGTTTAATTGGTAATTTAAACTTGCATCAAAGTCCGAGAATTGAGGATGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAGGAGTTTTTATTGGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACAACTTTCCAATCTGATTTTTGTTTATGTGTGGTTGTCCTCCAACAGTCCTACATCAAGCAACTCCAATGTTGAGGAACTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCTGAGCAACAACTCAGGTTATTTGAACCTGATTTTCTTTCATTCACGTCAAATGCTGAAATAAATTCTTGTGAAAAAAATCTTTTAGATACTTTGGCGCGAATCACCCAAAGGAAGAAAGATCTATTAAGCACTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAACCTCTTTTGAAAGCGATGTTGGTAATTGGCTGCCAGAAAATGGACAAAATAATCCTAACCAAATTTGTGTTGCATCTGAATCATCTTCCATTCCTCAAAGTGGGCAGTATCCAACCACGACAGTATATGATCAAGTAGTCTCACAAGCAGCAACAACAAACATAAATGTTGGCGTTGGCGTTGGTGTTGGTGTTGGTGGCTATGACATTGCAAATCCCAACGACGACGGTTTCTCCCCATGGCATCATAACTACACCACAACTCAACTTCTCTCTTCCTTCATCCCTCAAACTTCCTTCGATGTTGTCAAGAATGAAATTGGAGAGCCTTGCATGAATACAATGATACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAACTATGATAATGTCAAGTTGTCTCAACTCAATGTGGATTAA 1119 39.05 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRSLIGNLNLHQSPRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQQLSNLIFVYVWLSSNSPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNAEINSCEKNLLDTLARITQRKKDLLSTHLSPYEPPNGIQIYLDQQDGIPTSFESDVGNWLPENGQNNPNQICVASESSSIPQSGQYPTTTVYDQVVSQAATTNINVGVGVGVGVGGYDIANPNDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKNEIGEPCMNTMIPQQQVDSISNGNQMPPSDGSANYDNVKLSQLNVD 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21841136 21844177 + MELO3C008942.2.1 Cme08g01835 336098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01835 372 MobiDBLite consensus disorder prediction 344 364 - -
Cme08g01835 372 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 338 - -
Cme08g01835 372 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 338 - -
Cme08g01835 372 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Cme08g01835 372 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Cme08g01835 372 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 Coils Coil 139 159 - -
Cme08g01835 372 CDD MADS_MEF2_like 2 87 IPR033896 GO:0000977|GO:0045944
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01835 - - - csv:101222576 638.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01741 Cme-Chr7:22885884 Cme08g01835 Cme-Chr8:21841136 1.61E-09 dispersed
Cme08g01835 Cme-Chr8:21841136 Cme10g00405 Cme-Chr10:2581053 1.72E-24 dispersed
Cme08g01835 Cme-Chr8:21841136 Cme12g01984 Cme-Chr12:25598671 4.50E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41866 PF00319 SRF-TF 1.20E-25 No_clan Cme TF