Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01835 ATGGGGAGAGTTAAATTGCAAATCAAGAGAATTGAAAATACAACTAATCGGCAAGTAACTTTTTCGAAACGAAGAAATGGACTCATCAAGAAGGCTTATGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGTCTCAGCCAGTTCTCCGGCCGCCGCAGTTTAATTGGTAATTTAAACTTGCATCAAAGTCCGAGAATTGAGGATGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAGGAGTTTTTATTGGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACAACTTTCCAATCTGATTTTTGTTTATGTGTGGTTGTCCTCCAACAGTCCTACATCAAGCAACTCCAATGTTGAGGAACTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCTGAGCAACAACTCAGGTTATTTGAACCTGATTTTCTTTCATTCACGTCAAATGCTGAAATAAATTCTTGTGAAAAAAATCTTTTAGATACTTTGGCGCGAATCACCCAAAGGAAGAAAGATCTATTAAGCACTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAACCTCTTTTGAAAGCGATGTTGGTAATTGGCTGCCAGAAAATGGACAAAATAATCCTAACCAAATTTGTGTTGCATCTGAATCATCTTCCATTCCTCAAAGTGGGCAGTATCCAACCACGACAGTATATGATCAAGTAGTCTCACAAGCAGCAACAACAAACATAAATGTTGGCGTTGGCGTTGGTGTTGGTGTTGGTGGCTATGACATTGCAAATCCCAACGACGACGGTTTCTCCCCATGGCATCATAACTACACCACAACTCAACTTCTCTCTTCCTTCATCCCTCAAACTTCCTTCGATGTTGTCAAGAATGAAATTGGAGAGCCTTGCATGAATACAATGATACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAACTATGATAATGTCAAGTTGTCTCAACTCAATGTGGATTAA 1119 39.05 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRSLIGNLNLHQSPRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQQLSNLIFVYVWLSSNSPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNAEINSCEKNLLDTLARITQRKKDLLSTHLSPYEPPNGIQIYLDQQDGIPTSFESDVGNWLPENGQNNPNQICVASESSSIPQSGQYPTTTVYDQVVSQAATTNINVGVGVGVGVGGYDIANPNDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKNEIGEPCMNTMIPQQQVDSISNGNQMPPSDGSANYDNVKLSQLNVD 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21841136 21844177 + MELO3C008942.2.1 Cme08g01835 336098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01835 372 MobiDBLite consensus disorder prediction 344 364 - -
Cme08g01835 372 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 338 - -
Cme08g01835 372 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 338 - -
Cme08g01835 372 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Cme08g01835 372 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Cme08g01835 372 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme08g01835 372 Coils Coil 139 159 - -
Cme08g01835 372 CDD MADS_MEF2_like 2 87 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01741 Cme-Chr7:22885884 Cme08g01835 Cme-Chr8:21841136 1.61E-09 dispersed
Cme08g01835 Cme-Chr8:21841136 Cme10g00405 Cme-Chr10:2581053 1.72E-24 dispersed
Cme08g01835 Cme-Chr8:21841136 Cme12g01984 Cme-Chr12:25598671 4.50E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41866 PF00319 SRF-TF 1.20E-25 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01835 - - csv:101222576 638.647