Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01846 ATGACTGATATGATGGTAAAAGAAAATTTGGTGCAGAGAGTAGATGACGAGGCTAAAGAGAATGATTGTTCGACTATTGGGAGTGAAGATTTGGGTTCTCAGTCTCGCCATAGTGTAGGGAAGGAATCTGGGGCCAGTTGTCGTGTGTGCCAATGTGTTGAATCTGACAGAAGAGGTGATGCGGTTTTAGGATTTCTTGGTATCACTCCTCCAATTATGGAAGCGAGAAAATGTGATGGGGATCGGGATTCTAAGCCTGATAAGCAGAGTGCAGAAAATGTTGACGGTGGTTCTATGCTGAAGAAAGATGATAAAGGGGATTCGGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTTATTTGCAAAACTGACATTGAAATGGGTTCATGTCATCATGAAGATGCATTAGTGGAGCTTGGGTGTTCATGCAAGAGTGACCTTGCACTTGTACACTACGCATGTGCTCTCAAGTGGTTTGTTAGCCATGGTTCTACAGTTTGTGAAATCTGTGGATGTATTGCGGAAAATATTAGAACCGACGACTTTAGGAAGGTCGTGAGTTCTTTAAAAGAATACGAAGCTTTAAGGGAGAGAACTGTTAGTGGGGTACCTAATCCTATGCAGACTACTGCTAGTACTGATATTGATCCTGATGCCGTTGCTGCTGTCCGCAGACAGCGGCTAAGTGAAATCTCGTTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAACCTCTCAGGTTGTTTCCGAACATCTGAATACCATCTCAGAAAATTTTGTTCATGCCGAAAATCCTGCTACCAGGTGGGCTGTTGAGGGTACTGGAATTCTTCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTTGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACACGCTGCTCATACAACGTAG 1104 44.02 MTDMMVKENLVQRVDDEAKENDCSTIGSEDLGSQSRHSVGKESGASCRVCQCVESDRRGDAVLGFLGITPPIMEARKCDGDRDSKPDKQSAENVDGGSMLKKDDKGDSGSIKFIGPNGEVFICKTDIEMGSCHHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTVSGVPNPMQTTASTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTATSQVVSEHLNTISENFVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22207544 22222414 + MELO3C008933.2.1 Cme08g01846 336109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01846 367 MobiDBLite consensus disorder prediction 76 107 - -
Cme08g01846 367 Pfam RING-variant domain 135 172 IPR011016 GO:0008270
Cme08g01846 367 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 366 - -
Cme08g01846 367 MobiDBLite consensus disorder prediction 16 40 - -
Cme08g01846 367 MobiDBLite consensus disorder prediction 26 40 - -
Cme08g01846 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 181 IPR013083 -
Cme08g01846 367 ProSiteProfiles Zinc finger RING-CH-type profile. 115 179 IPR011016 GO:0008270
Cme08g01846 367 PANTHER ZINC FINGER, RING-CH-TYPE 4 366 - -
Cme08g01846 367 SUPERFAMILY RING/U-box 136 174 - -
Cme08g01846 367 SMART ringv_2 132 173 IPR011016 GO:0008270
Cme08g01846 367 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01846 Cme-Chr8:22207544 Cme04g02676 Cme-Chr4:32354974 1.87E-08 dispersed
Cme08g01846 Cme-Chr8:22207544 Cme12g00120 Cme-Chr12:1245635 2.98E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01846 - - csv:101218157 704.901