Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01883 ATGCCCAACATGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGTCAGGCTAAACCTTCCGACTTGGAAACCATTACTTGCAAAACCTGCGTCACTCCTTGGCATGTCCCTTGTCTCTCAAACCCCCCTGAAACCCTAGAATCTACTCTTCAATGGGACTGTCCCGATTGTTCACTCCCTTCTCAGGATGCATTCCTTCCTCCCCCTTCCAGTTCTCCACTCCCCATTCACCCTTCTAATGATCTCATTGCTGCGATTCGAGCCATTGAAGCTGATTCTTCCCTTCCTGACTCCCAGAAGGCAAAGAAACGCCAGGACCTGCTTACCGGAAACTCACTCTCCCACGAGATCAATGATGTTGACAAAAAACAAGGAGACGATGTTTTGGATTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAGTTACCGGATAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAAAATACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCTAAAATGGCAAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCCAAATTGTCAAAATCATCTGTTTCTGGAGGACCTCAGAAGGCTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCCGACCATTTTGGTCCTATTCCTGCTGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGCCAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGAAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGCTATCCTGTTAGAGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGCTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGATCATGGAGATCGACCTAGACCATTACCATCAATTCCAGAGTTAAAAAAAGCAACAAATATTACCGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAAAAAGATAGCCAGTGGAAATGGAGCAAACCTCCCCCGATAAGCACGAGACCAGTAGAAACTGAAGATCCTGCCACTGGGAAGAGGTCAAGGAGAAAATTTAGGCAAGCACACAACATGAATGTACGGGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTCGAGAGGTGATGAGTCTGCCAATTACTACGCCGTGTGCCCATAACTTCTGCAAGTCATGCTTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGAAGTCTTAGATCACGAAAGAATGTCATGGCTTGTCCTTGTTGCCCGACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCCTTGAAAGGTAAGCTTGAAGAAGAAGGGGATGCATCTGAGAAGCTTTGTGAAGAAGAGATAGATGGGGAGGAAGAGGAGGAGGAGGAGGAGGGAGAAGATGAAGTGGAAAATAGAAAACAAGCAAAGATGGCGATTAATGGTGGGGAGGAAAATCCTGTCATTTGA 1944 44.96 MPNMVSQLPCDGDGICMLCQAKPSDLETITCKTCVTPWHVPCLSNPPETLESTLQWDCPDCSLPSQDAFLPPPSSSPLPIHPSNDLIAAIRAIEADSSLPDSQKAKKRQDLLTGNSLSHEINDVDKKQGDDVLDLFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSSVSGGPQKAYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDDHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSQWKWSKPPPISTRPVETEDPATGKRSRRKFRQAHNMNVRERLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIESLKGKLEEEGDASEKLCEEEIDGEEEEEEEEGEDEVENRKQAKMAINGGEENPVI 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22863850 22872565 - MELO3C008906.2.1 Cme08g01883 336146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01883 647 CDD RING-HC 142 180 - -
Cme08g01883 647 SMART ring_2 142 180 IPR001841 -
Cme08g01883 647 SMART ring_2 514 570 IPR001841 -
Cme08g01883 647 MobiDBLite consensus disorder prediction 605 627 - -
Cme08g01883 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 208 IPR013083 -
Cme08g01883 647 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 5 635 - -
Cme08g01883 647 SUPERFAMILY RING/U-box 133 188 - -
Cme08g01883 647 Gene3D - 241 437 IPR036987 -
Cme08g01883 647 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Cme08g01883 647 SUPERFAMILY PUA domain-like 244 440 IPR015947 -
Cme08g01883 647 MobiDBLite consensus disorder prediction 426 440 - -
Cme08g01883 647 MobiDBLite consensus disorder prediction 426 495 - -
Cme08g01883 647 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Cme08g01883 647 ProSitePatterns Zinc finger PHD-type signature. 16 61 IPR019786 -
Cme08g01883 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 619 IPR013083 -
Cme08g01883 647 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Cme08g01883 647 SMART G9a_1 265 422 IPR003105 -
Cme08g01883 647 SUPERFAMILY RING/U-box 507 595 - -
Cme08g01883 647 SMART PHD_3 15 62 IPR001965 -
Cme08g01883 647 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Cme08g01883 647 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Cme08g01883 647 MobiDBLite consensus disorder prediction 447 469 - -
Cme08g01883 647 Pfam SAD/SRA domain 273 421 IPR003105 -
Cme08g01883 647 MobiDBLite consensus disorder prediction 601 647 - -
Cme08g01883 647 Pfam RING-type zinc-finger 514 549 IPR027370 -
Cme08g01883 647 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 635 IPR045134 -
Cme08g01883 647 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Cme08g01883 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01883 Cme-Chr8:22863850 Cme06g02528 Cme-Chr6:32320566 1.13E-13 dispersed
Cme08g01883 Cme-Chr8:22863850 Cme08g02217 Cme-Chr8:28369299 4.22E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01883 K10638 - csv:101220457 1259.59