Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01938 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTCAAGAAATTGGTTAATGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCTGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGACCCAGTGCGGAGAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGCTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGTTTTGGTTCTAAATGATGTTGACAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGTCAAGGTTTTAGAGTTCATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGAATTGCAGAAAAATCAAGCCGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCGGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGATTGTTCCAGGTTCGTGGGAAGTTATATGAGTTACTGGTGAATTGTATCCCTCCGGAGATCATATTGAAGAGACTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAA 1065 42.91 MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQYPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23951545 23957446 + MELO3C008864.2.1 Cme08g01938 336201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01938 354 Gene3D - 1 189 IPR027417 -
Cme08g01938 354 CDD AAA 19 181 - -
Cme08g01938 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Cme08g01938 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Cme08g01938 354 Gene3D - 190 243 - -
Cme08g01938 354 Gene3D - 252 345 - -
Cme08g01938 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Cme08g01938 354 Pfam DNA polymerase III, delta subunit 18 187 - -
Cme08g01938 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Cme08g01938 354 SMART AAA_5 33 192 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00301 Cme-Chr6:1833786 Cme08g01938 Cme-Chr8:23951545 1.66E-49 dispersed
Cme07g00817 Cme-Chr7:7770374 Cme08g01938 Cme-Chr8:23951545 3.90E-22 dispersed
Cme08g00857 Cme-Chr8:5647780 Cme08g01938 Cme-Chr8:23951545 9.14E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01938 K10756 - csv:101221072 676.011