Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01961 | ATGGCTTCCAATTTCTGGTCCTTAGCATGTATTCGTAGTCCAAACAGCAGCAATCTCTCTCCACGCCCTCATTATCCCTCTATGCCCAAATACCCAGCTGGGGTTTCCCAGCCAGAGAATAGCTTACGGGTGATCGAGTCCACAGCGTTCTTCTCCGTCACCGGAATGACCTGCTCTGCTTGTGCTGGCTCTGTCGAGAAAGCCATCAAACGTCTTCCTGGGATTCGTGAAGCCGTCGTTGGTGTTTTGAATGCCAAAGCTCGTGTCCAGTTTTACCCTAGCTTCGTTAATGTGGATCAAATATGTGAGGCAATTAATGATGCAGGCTTTGAAGCAAGTGTTGTCAATGATGATATGATTGAAAGATGTCGAATTCGTGTAATTGGGATGACCTGCACTTCGTGTTCCACAACTTTGGAATCTACATTACTAGCAATTGGTGGAGTTCAAAACGCTCAAGTTGCATTAGCCACGGAAGAAGCAGAAATTTGTTATGATCCAAGGATTTTGAACTACAATCAACTTCTCCAAGCCATTGAAGATTCTGGATTTGAAGCTATACTTATTAGTACAGAAGATGATGTGAGCAAGATACAGCTCCATGTTGAGGGAGTGAGAACTGAGAGTTCAATGAGATTGATTGGGAGCTCTCTGGAAGCACTTCCTGGAGTTTTAGGTATTGATATTGACCCTGCAGCCAATAAACTTTCCTTGTCTTACAAACCAAATGTCACGGGACCTCGGAATGTAATCCAAGTGATTGAATCAACTGGATCGGGTCGATATAAGGCAACAATATTTCCTGAAGGAGAAGGCAGAGAAGCTTATAAAAAGGAGGAAATTAAGCAATATTACAGATCATTCTTATGGAGCCTGATATTTACAATTCCAGTATTTCTAAGCTCCATGGTCTTCACTTATATACCTGGTATTAAGGAAGGGCTAGATACTAAAATTGTCAATATGATGACTGTTGGAGAGCTGCTGAGGTGGGTGTTGTCAACTCCTGTACAGTTCATTATTGGACGGCGGTTCTATACTGGGTCTTATAAAGCATTGCGTCATGGTTCTGCGAATATGGATGTTTTGATTGCTTTAGGGACAAATGCAGCATACTTTTATTCAGTCTACATGGTCTTAAGATCTGCAACCTCAAGTGATTTTAAGGCCACGGACTTCTTTGAGACCAGTTCCATGCTTATTTCATTCATTCTCCTTGGGAAATATCTTGAGGTCTTGGCAAAGGGAAAGACATCAGAGGCTATTGCCAAGCTTATGAAGTTGGTGCCTGAAACAGCGGCGCTGCTTACTTTTGATAATGATGGAAATATCATTAGGGAAGAAGAAATTGATAGTCGGTTGATACAAAAGAATGATGTGATTAAAGTCATTCCAGGGGCAAAAGTTGCTTCAGATGGAATTGTTGTTTGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAAAGAAGGGATGATACAGTGATTGGAGGCACCTTGAACGAGAACGGGGTGCTACATGTGAGAGCAACACATGTTGGATCTGAAAGTGCTCTTGCACAGATTGTGCGACTAGTTGAATCAGCTCAGATGGCCAAGGCTCCTGTCCAGAAAATTGCAGATCGCATCTCTAAGGTTTTTGTGCCAATGGTAATAGTCCTTTCATTGACAACGTGGCTTGTCTGGTTTCTCACTGGGAAGTATGGTGGCTACCCAAGTTCTTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCTCTCCAGTTTGGTATCTCAGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACCGCTGTCATGGTTGGAACAGGAGTTGGGGCATCAAAAGGTGTTTTAATCAAAGGCGGCCAAGCATTAGAGAGTGCTCACAAGGTGAATTGCATTGTGTTCGACAAGACTGGAACTCTTACAATCGGGAAGCCAGTTGTGGTGAACACGAAGCTACTTAAAAATATGGCTTTGAAAGAATTTTGTGTACTAGTTGCCGCCACTGAGGTTAACAGCGAGCATCCACTGGCTAAAGCTGTTGTCGAATATGCTCAAAAGTTCAAAGAAGAAGACGATAACAAGACTTGGCCTGAAGCACAAGACTTCATCTCCATTACTGGACATGGAGTTAAGGCCATCGTTCAAAACAAAGAAGTACTTGTAGGCAACAAGAGTCTTATGTTAGATCAGAACATCTTCATACCTATTGAAGCTGAAGAAATATTAAAAGAAATTGAAGAAATGGCGCAAACTGGAATTTTGGTATCCATTGATAGAAAATTGACAGGAGTTCTTGCCATATCTGATCCACTAAAACCAAGTGCTCGCGAGGTTATTTCGATACTCAAGGCCATGAAAGTTAAATCTATCATGGTGACAGGTGATAATTGGGGAACAGCAAAGTCCATAGCCAATGAGGTTGGGATTGACGATGTAACTGCAGAAGCTAAGCCTGACCAGAAAGCTGAAGAAGTGAAGAGATTACAGTCTTTGGGTCATACGGTGGCAATGGTTGGGGACGGTATCAACGACTCACCAGCACTTGTGGCTGCAGATGTTGGAATGGCAATTGGTGCAGGCACAGACATTGCTATTGAGGCAGCCGACATTGTTCTCATGAAAAGCAACTTAGAGGATGTCATAACCGCCATCGACCTTTCGAGGAAAACCTTCTCTAGGATCCGTCTGAACTACATTTGGGCACTTGGTTACAATCTCCTCGGCATCCCCATAGCAGCAGGAGTCCTATTTCCATCAACTCGGTTTCGGTTACCACCATGGATTGCAGGAGCAGCAATGGCAGCCTCTTCTGTGAGTGTTGTTTGTAGTTCTCTCCTTCTCAAGTATTACAAAAGACCTAAGAAGCTTGATACCCTTGAGATACAAGGCATTAGAGTTGAGTGA | 2946 | 43.41 | MASNFWSLACIRSPNSSNLSPRPHYPSMPKYPAGVSQPENSLRVIESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVGVLNAKARVQFYPSFVNVDQICEAINDAGFEASVVNDDMIERCRIRVIGMTCTSCSTTLESTLLAIGGVQNAQVALATEEAEICYDPRILNYNQLLQAIEDSGFEAILISTEDDVSKIQLHVEGVRTESSMRLIGSSLEALPGVLGIDIDPAANKLSLSYKPNVTGPRNVIQVIESTGSGRYKATIFPEGEGREAYKKEEIKQYYRSFLWSLIFTIPVFLSSMVFTYIPGIKEGLDTKIVNMMTVGELLRWVLSTPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYMVLRSATSSDFKATDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMKLVPETAALLTFDNDGNIIREEEIDSRLIQKNDVIKVIPGAKVASDGIVVWGQSHVNESMITGEAKPVAKRRDDTVIGGTLNENGVLHVRATHVGSESALAQIVRLVESAQMAKAPVQKIADRISKVFVPMVIVLSLTTWLVWFLTGKYGGYPSSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASKGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVNTKLLKNMALKEFCVLVAATEVNSEHPLAKAVVEYAQKFKEEDDNKTWPEAQDFISITGHGVKAIVQNKEVLVGNKSLMLDQNIFIPIEAEEILKEIEEMAQTGILVSIDRKLTGVLAISDPLKPSAREVISILKAMKVKSIMVTGDNWGTAKSIANEVGIDDVTAEAKPDQKAEEVKRLQSLGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKYYKRPKKLDTLEIQGIRVE | 981 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24343751 | 24349542 | - | MELO3C008846.2.1 | Cme08g01961 | 336224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01961 | 981 | ProSiteProfiles | Heavy-metal-associated domain profile. | 122 | 188 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | PANTHER | COPPER-TRANSPORTING ATPASE HMA5-RELATED | 1 | 972 | - | - | |
Cme08g01961 | 981 | SFLD | p-type atpase | 629 | 904 | IPR044492 | - | |
Cme08g01961 | 981 | Pfam | haloacid dehalogenase-like hydrolase | 643 | 866 | - | - | |
Cme08g01961 | 981 | Gene3D | - | 120 | 193 | - | - | |
Cme08g01961 | 981 | Gene3D | - | 654 | 731 | IPR023299 | GO:0000166 | |
Cme08g01961 | 981 | Gene3D | - | 732 | 783 | IPR023299 | GO:0000166 | |
Cme08g01961 | 981 | SUPERFAMILY | HMA, heavy metal-associated domain | 48 | 117 | IPR036163 | GO:0046872 | |
Cme08g01961 | 981 | SUPERFAMILY | HAD-like | 646 | 958 | IPR036412 | - | |
Cme08g01961 | 981 | CDD | P-type_ATPase_Cu-like | 286 | 948 | - | - | |
Cme08g01961 | 981 | CDD | HMA | 51 | 113 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | SUPERFAMILY | HMA, heavy metal-associated domain | 192 | 260 | IPR036163 | GO:0046872 | |
Cme08g01961 | 981 | ProSitePatterns | Heavy-metal-associated domain. | 127 | 156 | IPR017969 | GO:0046872 | |
Cme08g01961 | 981 | ProSiteProfiles | Heavy-metal-associated domain profile. | 197 | 258 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | Gene3D | - | 415 | 537 | - | - | |
Cme08g01961 | 981 | CDD | HMA | 199 | 265 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | Gene3D | - | 195 | 268 | - | - | |
Cme08g01961 | 981 | TIGRFAM | TIGR00003: copper ion binding protein | 51 | 112 | IPR006122 | GO:0005507 | |
Cme08g01961 | 981 | ProSiteProfiles | Heavy-metal-associated domain profile. | 48 | 114 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 497 | - | - | |
Cme08g01961 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 661 | - | - | |
Cme08g01961 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 788 | - | - | |
Cme08g01961 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 799 | 809 | - | - | |
Cme08g01961 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 852 | 871 | - | - | |
Cme08g01961 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 875 | 887 | - | - | |
Cme08g01961 | 981 | Gene3D | - | 614 | 909 | IPR023214 | - | |
Cme08g01961 | 981 | Gene3D | - | 43 | 115 | - | - | |
Cme08g01961 | 981 | Pfam | Heavy-metal-associated domain | 51 | 111 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | Pfam | Heavy-metal-associated domain | 125 | 185 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 400 | 934 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme08g01961 | 981 | SUPERFAMILY | HMA, heavy metal-associated domain | 120 | 194 | IPR036163 | GO:0046872 | |
Cme08g01961 | 981 | SFLD | C1.7: P-type atpase like | 629 | 904 | - | - | |
Cme08g01961 | 981 | CDD | HMA | 125 | 186 | IPR006121 | GO:0046872 | |
Cme08g01961 | 981 | Pfam | E1-E2 ATPase | 430 | 626 | - | - | |
Cme08g01961 | 981 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 360 | 961 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Cme08g01961 | 981 | PANTHER | ATP7, ISOFORM B | 1 | 972 | - | - | |
Cme08g01961 | 981 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 392 | 920 | IPR023298 | - | |
Cme08g01961 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 48 | 73 | - | - | |
Cme08g01961 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 74 | 97 | - | - | |
Cme08g01961 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 103 | 123 | - | - | |
Cme08g01961 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 145 | 166 | - | - | |
Cme08g01961 | 981 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 649 | 655 | IPR018303 | - | |
Cme08g01961 | 981 | ProSitePatterns | Heavy-metal-associated domain. | 53 | 82 | IPR017969 | GO:0046872 | |
Cme08g01961 | 981 | SUPERFAMILY | Calcium ATPase, transduction domain A | 447 | 533 | IPR008250 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00036 | Cme-Chr8:294487 | Cme08g01961 | Cme-Chr8:24343751 | 2.34E-15 | dispersed | |
Cme08g01961 | Cme-Chr8:24343751 | Cme09g01752 | Cme-Chr9:22014667 | 0 | dispersed | |
Cme08g01961 | Cme-Chr8:24343751 | Cme03g01691 | Cme-Chr3:25617688 | 5.82E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01961 | K17686 | - | csv:101218801 | 1820.05 |