Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02007 ATGAATGACTTAATGACCAAATCTTTCACAAGCTATGTGGATCTGAAGAAGGCAGCCATGAAGGATCTCGATCTCGAAGCCGGTCTAGAAATGGCATCATCCGTTAACGGTGACAACGGTGACATGGGTCAGTTTCTGGAAGAGGCAGAGAAGGTGAAAATGGAGATGGGTTCGATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAACGAAGAGACCAAATCTGCTCACAAACCCGAAACCCTCAAATTGCTTCGTGATGCGATCAATGTCGACATTGTCACTGTCCTGAAAAAGGCAAGGTCGATCCGATCTCAGCTTGAGGAAATGGATCGTGCCAACGCTGCCAAGAAACGTCTCTCCGGCAGCAAAGAAGGTTCTGCCATTTACAGGACAAGAATTGCAGTGACCAACGGGCTACGGAAGAAGCTAAAGGAATTAATGATGGAGTTTCAAAGCTTGAGGCAGAGGATGATGACAGAGTACAAAGAAACGGTTGGGCGCCGATACTTCACGGTGACGGGGGAGCATCCGGAGGAAGAGGTAATAGAGAAGATAATATCGAATGGGGGGGAGGAGTTTTTAGCAAGGGCAATACAGGAGCACGGGCGAGGGAAGGTGGCGGAGACGGTGGTTGAGATACAGGACCGACATGGGGCGGCGAAGGAGATAGAGAAGAGCTTGTTAGAGCTACACCAAGTGTTTTTGGACATGGCAGTAATGGTTGAAGCACAAGGGGAGAAAATGGATGATATTGAACATCACGTTATGAATGCCTCACAATATGTTAGAGATGGGACTAAGGATTTGAAAACAGCAAAGGATTTGCAAAGGAATAGTAGAAAATGTATGTGTTTTGGGATTTTGCTTTTGCTTGTGCTTATTTTGGTTGTTGTTATCCCAATTGCTGTTAGTTTTGGAAGTTCTTGA 930 45.48 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMASSVNGDNGDMGQFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKLLRDAINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGSAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLARAIQEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKCMCFGILLLLVLILVVVIPIAVSFGSS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25241527 25243038 - MELO3C008794.2.1 Cme08g02007 336270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02007 309 Pfam Syntaxin 44 246 IPR006011 GO:0016020
Cme08g02007 309 SMART SynN_4 37 163 IPR006011 GO:0016020
Cme08g02007 309 SMART tSNARE_6 206 273 IPR000727 -
Cme08g02007 309 CDD SNARE_syntaxin1-like 210 272 - -
Cme08g02007 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme08g02007 309 Gene3D - 37 166 - -
Cme08g02007 309 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Cme08g02007 309 Pfam SNARE domain 248 299 IPR000727 -
Cme08g02007 309 Gene3D - 206 307 - -
Cme08g02007 309 CDD SynN 42 198 IPR006011 GO:0016020
Cme08g02007 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Cme08g02007 309 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 302 - -
Cme08g02007 309 PANTHER SYNTAXIN 4 302 IPR045242 -
Cme08g02007 309 Coils Coil 137 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g01796 Cme08g02007 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02007 Cme-Chr8:25241527 Cme12g01397 Cme-Chr12:21851130 2.24E-100 dispersed
Cme08g02007 Cme-Chr8:25241527 Cme04g02317 Cme-Chr4:30097548 5.44E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02007 K08486 - csv:101220775 563.148