Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02008 ATGATTAATTCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCATCTCTTGGGGTTCTCACTTCCGTTCTCTACTCAGCCGCCGGTGTTTATGGAATCCCACTTCACCCACTTCTTATCACTACTACTCTTGTTTTCATTCTTGTTTTTGTTTTTAATATAATTGGTGCTCTTTTGGGTGGAGCTAGCTTTAATCCTACTGCCACTGCTGCTTTTTATGCTGCTGGTGTGGGTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCGGCTGGTGCGGTTGCTGGTGCCATGGCAATCAAGGAGGTGATGCCTATACAATACAAGCACATGCTTGGTGGACCTTCTTTGAAAGTTGACATTCATTCTGGAGCTACAGCCGAAGGAGTTTTGACCTTCATAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGGGGTCCCTCCAGCCCTGTTATCAAAACATGGTTGCTGGCAATGGCCACCGTAGCGTTAATTGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCATTTGGATGGGCATATCTAAACAACAGGCATGATACATGGGAGCAGTTGTATGTGTACTGGATCTCCCCCTTCGTAGGAGCCATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCACCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTAA 732 47.13 MINSIKAAIGDAVLTSMWIFCASSLGVLTSVLYSAAGVYGIPLHPLLITTTLVFILVFVFNIIGALLGGASFNPTATAAFYAAGVGPTSLFAMAIRFPAQAAGAVAGAMAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYLNNRHDTWEQLYVYWISPFVGAILAAWLFRIIFPPPPPAPAKQKKA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25274615 25279174 + MELO3C008793.2.1 Cme08g02008 336271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02008 243 Gene3D Glycerol uptake facilitator protein. 2 235 IPR023271 -
Cme08g02008 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 Pfam Major intrinsic protein 3 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02008 243 PANTHER AQUAPORIN SIP1-1 3 242 - -
Cme08g02008 243 SUPERFAMILY Aquaporin-like 3 239 IPR023271 -
Cme08g02008 243 PANTHER AQUAPORIN SIP1-1 3 242 IPR044222 GO:0015250
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02145 Cme-Chr4:28747210 Cme08g02008 Cme-Chr8:25274615 3.98E-22 dispersed
Cme08g02008 Cme-Chr8:25274615 Cme10g00071 Cme-Chr10:533417 5.42E-13 dispersed
Cme08g02008 Cme-Chr8:25274615 Cme04g02532 Cme-Chr4:31581885 1.80E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02008 K09875 - csv:101220534 421.009