Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02024 ATGGCAGAATTAGATGATCAAGATCAAGTAGTTGACCCTCCTCCCTATTTTCTCTGTCCCATCTCCTTGCAAATCATGAAAGATCCCGTTACCATCGCCTCCGGCATAACCTACGACCGCGAAAGCATCGAGAAATGGTTGTTTTCCGACAAACACAAGACATGCCCCGTCTCGCACATAGTTTTGTCAGACTTTGACGTCACTCCCAACCATACTTTAAGACGAGTCATTCAAGCTTGGTGCACCGTCAATGCTTCTAAAGGTGTAGAGAGGATACCGACGCCGAAGCCCCCAGTCGACCGGGAGCAAGTTGTTCGGATTCTTGCCGATGCTAAGTTATCTCCATTCTCTCAAAAGAATTGCCTTTGTCGCCTTCGATCTATTGCTGCGGCAAATGAAAGTAATAAACGTTGCATGGAATCTGCTGGAGTTGTGGAGTTCTTGGCTGGGGTTGTGTGTAATTCTACCACCAACATGGAGTATGGCTTAGAAGATTACGCGTTTGACGACATGTCGGCAAATTCAGCCGATGAGGCTTTGATTATTCTTCATAAACTCCAAATCTCCGAATCCTCTCTAAAATTTCTCCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTACAAAATCGAAGCTATTCCTCTCGATCATATTCAGTAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGATTCAAATCCAAAATCTCACCGCCGATTTCTTTATCGAAATCATCCAAATCCTCAAAGATCAAATCTCCAAACAAGCCTCCAAATCGGCATTGAAATTGCTAATCGCCGTCTCTTCTAGTTTCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCAGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCGTCGGAGAATAAGCGTTTGTGCGAAATGATTCTCGTACTGCTCGATCAGCTCTGTGGCTGTGCCGATGGCAGGGCGGAGCTGTTGAATCATGCGGCGGGGATTGCCGTGGTGTCGAAGAAGATTCTGAGAATTTCGACGGTTGGAAGCGAGAAAGCGGTTGGGATCTTGTGGTCTATAGCGAGATTCTCGGGGAGTCAAAGCGTGGTTCAGGAAATGGTGAGGATTGGTGTTGTGACGAAGCTGTGTTTTCTGCTTCAGGTGGTGGGCGCCGGAGTGAAAGCGAAGGAGAAAGCTAAAGAGATTTTGAAGCTTCATGGTCGGACATGGCGGAATTCGTCGTGTTTGCCTTCGACTTTGCGATCAGCTTATCCACAATAA 1281 46.68 MAELDDQDQVVDPPPYFLCPISLQIMKDPVTIASGITYDRESIEKWLFSDKHKTCPVSHIVLSDFDVTPNHTLRRVIQAWCTVNASKGVERIPTPKPPVDREQVVRILADAKLSPFSQKNCLCRLRSIAAANESNKRCMESAGVVEFLAGVVCNSTTNMEYGLEDYAFDDMSANSADEALIILHKLQISESSLKFLLSNNGGIFISTLTKILQNRSYSSRSYSVMLLNSMFEVADQIQIQNLTADFFIEIIQILKDQISKQASKSALKLLIAVSSSFRNRVKAVQAGAVPVLIDLLLDLDSSENKRLCEMILVLLDQLCGCADGRAELLNHAAGIAVVSKKILRISTVGSEKAVGILWSIARFSGSQSVVQEMVRIGVVTKLCFLLQVVGAGVKAKEKAKEILKLHGRTWRNSSCLPSTLRSAYPQ 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25461875 25463623 - MELO3C008784.2.1 Cme08g02024 336287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02024 426 PANTHER WDSAM1 PROTEIN 11 425 IPR045185 GO:0061630
Cme08g02024 426 SUPERFAMILY ARM repeat 104 387 IPR016024 -
Cme08g02024 426 CDD RING-Ubox_PUB 17 59 IPR045210 -
Cme08g02024 426 SUPERFAMILY RING/U-box 8 87 - -
Cme08g02024 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Cme08g02024 426 SMART Ubox_2 16 80 IPR003613 GO:0004842|GO:0016567
Cme08g02024 426 Pfam U-box domain 14 83 IPR003613 GO:0004842|GO:0016567
Cme08g02024 426 ProSiteProfiles U-box domain profile. 12 87 IPR003613 GO:0004842|GO:0016567
Cme08g02024 426 Gene3D - 101 405 IPR011989 -
Cme08g02024 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 11 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00240 Cme-Chr5:1752969 Cme08g02024 Cme-Chr8:25461875 9.43E-128 dispersed
Cme06g00308 Cme-Chr6:1875354 Cme08g02024 Cme-Chr8:25461875 5.68E-70 dispersed
Cme07g00440 Cme-Chr7:2979812 Cme08g02024 Cme-Chr8:25461875 1.57E-46 dispersed
Cme08g02024 Cme-Chr8:25461875 Cme04g02322 Cme-Chr4:30163072 3.56E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02024 - - cmo:103485961 795.808