Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02035 ATGAATTATTGTTCTTCTTCTTCAAACCCTAGCCATGGCGGCAACCACTCCACTGTTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACGGTCTCTTCCACTACTTCCAACAACAATCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCTCAACCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGCTTGCCTTTGTTTCCACCGGAATCAAATCACCACCATAATAAGTTAAATACTCGTAATAACCCTTTTCCTCTTCCTAATCCATCTCAGGTTCTTCTTCATAATCCTCCTACTACTGCTACTACCTCCATTATCGCCGCCGCTTCTTCTCCCATGGATGATTCCTCCGCCACTGCTTGGATCGACGGTATCATTAAGGACTTAATCCATAGCTCCACTGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCATGTAACCCAAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGCTACTGAGGATCATCGAGTGAGAAAGTCCCCTTTGCCGTTGCCGGCGCCGGTTGCTGGACTGGGGTTGCAGCAGAGGCAGTTTAACCAAGAGCAGCATGAACAAGAACATGATTGTTCTGGATTAAAGCTAAATCTCGATTCTACTTCTCTGCATAATCTTTCTAATTTTCCCTCTCAGCCGCCGTTTCATGAGCCGTATCTTCAATGGGGGGCAACCCCTCCGCCTGTTCCCACTCCCTCCGCCGCAGCCGCCGGCGAGGATGCCTTACAGCGCCTCCCTGGTCATCATCAACTTAATCTATCGTCCGTTACACCATCGTCGCTTGTTCCTTTAAATCATGTCCCTTCTAAGCCACAATCAGAACAGCAGAACTCTAGTACTAAGGCGGCGGCGGCTGCACAGCCAGCTCCAGCACCACCATCAACGAGCAATAACCCCTCAGCGACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAGCAGAAGAGAGACGAAGAAGGGCTACATCTCTTGACTTTGCTTCTTCAATGCGCAGAAGCCGTTTCAGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCTGAGCTATCGACACCGTTCGGCACATCGGCGCAGAGGGTGGCGGCGTATTTCTCCGAAGCAATGTCGGCGAGGCTTGTGAGCTCTTGTTTGGGCATATATGCAGCTCTGCCGCCGTCGTTGGTGCCCCATACACACAGCCAGAAAATAGCCTCAGCCTTCCAAATCTTCAATGGCATAAGCCCATTTGTCAAATTTTCACATTTCACAGCCAATCAAGCCATACAAGAGGCTTTTGAAAGAGAGGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGGCTTCAATGGCCTGGCCTGTTCCACATTTTGGCGTCTAGACCCGGTGGGCCGCCGTACGTCCGCCTTACAGGGCTGGGGACCTCTCAGGAAGTTCTTGAAGCCACCGGCAAACGCCTAACTGAATTTGCTGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCCGTGGCTGATAAAATTGGCAATCTAGACTTGGAAAGGCTCAACGTGAGCAAAAGAGAAGCCGTTGCTGTTCATTGGATGCAGCATTCTCTTTATGAAGTTACTGGTTCCGATTCCAACACGCTATGGCTTTTGCAAAGATTGGCTCCAAAAGTTGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGCTCTTTCTTGGGGAGATTCGTTGAAGCCATTCATTACTATTCAGCACTGTTTGACTCATTAGGTGTGAGCTATGGCGAAGAGAGTGAAGAAAGACATTTAGTGGAGCAGCAACTATTATCGAGGGAAATCAGAAACGTGTTGGCTGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAGCAATCTGGGTTTAAGGGGATTTCCCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTAGAAGACAATGGTACTTTGAAACTTGGGTGGAAGGATCTTTGTTTGCTCACGGCGTCGGCTTGGAAGCCGCCGTTTCATCATCATGCGGCGGCGGCGGTGGCGGTCACCAACAACCATATTCCCCGTTACTGA 2253 48.87 MNYCSSSSNPSHGGNHSTVVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPESNHHHNKLNTRNNPFPLPNPSQVLLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFATEDHRVRKSPLPLPAPVAGLGLQQRQFNQEQHEQEHDCSGLKLNLDSTSLHNLSNFPSQPPFHEPYLQWGATPPPVPTPSAAAAGEDALQRLPGHHQLNLSSVTPSSLVPLNHVPSKPQSEQQNSSTKAAAAAQPAPAPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQIFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAVAVTNNHIPRY 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25642962 25647186 - MELO3C025282.2.1 Cme08g02035 336298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02035 750 Pfam GRAS domain family 370 729 IPR005202 -
Cme08g02035 750 MobiDBLite consensus disorder prediction 295 328 - -
Cme08g02035 750 MobiDBLite consensus disorder prediction 295 344 - -
Cme08g02035 750 ProSiteProfiles GRAS family profile. 360 729 IPR005202 -
Cme08g02035 750 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 55 731 IPR005202 -
Cme08g02035 750 MobiDBLite consensus disorder prediction 34 53 - -
Cme08g02035 750 PANTHER PROTEIN SCARECROW 55 731 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01645 Cme-Chr1:22343657 Cme08g02035 Cme-Chr8:25642962 7.80E-108 dispersed
Cme07g01458 Cme-Chr7:20331690 Cme08g02035 Cme-Chr8:25642962 1.68E-108 dispersed
Cme08g02035 Cme-Chr8:25642962 Cme10g00052 Cme-Chr10:401939 1.91E-71 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41873 PF03514 GRAS 5.40E-127 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02035 - - csv:101205286 1345.49