Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02049 ATGGAGAAGTACGAGAAGCTCGAAAAAGTCGGTGAAGGAACTTACGGTAAGGTCTACAAGGCCAAAGACAAAGAAACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTCGAAATGGACGAAGAAGGCGTTCCACCAACCGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAATCTCTCTATGTCGTTCGTCTTCTCTGTGTTGAGCATGTTCATCACCATAAGAGTGGTAAACCTCTTCTTTACCTTGTGTTTGAGTATCTCGACACTGATCTCAAGAAGTACATTGATTCGCATCGGAAAGGTCCCAATCCTAGGCCTCTTCCTTCCTCTCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGTGTTGCGCATTGTCATAGTCATGGTGTTCTTCACCGTGATCTCAAACCTCAAAATCTACTTCTCGATCAGGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGCCTTGGTCGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGATCTACACATTACTCCACTGCTGTCGATATGTGGTCTGTTGGCTGCATCTTCGCTGAAATGGTGAGAAGGCAGGCACTGTTCCCCGGAGATTCTGAGTTCCAGCAATTGCTTCACATTTTTAGGCTGCTAGGTACACCCAGTGAGAAACAATGGCCTGGAGTTAGCTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAAAATCTTACACGTGCAGTTCCATCCTTGGAACCCGAGGGTGTTGACCTTCTCTCGAAAATGCTTCAATATAATCCAGCAGACAGAATCTCAGCTAAAGCAGCTCTTGACCATCCATATTTTGATAGCCTCGACAAGTCTCAGTATTAA 918 45.42 MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPSEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSKMLQYNPADRISAKAALDHPYFDSLDKSQY 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25862569 25866216 + MELO3C025274.2.1 Cme08g02049 336312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02049 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02049 305 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02049 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Cme08g02049 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cme08g02049 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Cme08g02049 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cme08g02049 305 PANTHER CELL DIVISION PROTEIN KINASE 1 305 - -
Cme08g02049 305 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 305 - -
Cme08g02049 305 Gene3D Transferase(Phosphotransferase) domain 1 92 305 - -
Cme08g02049 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00023 Cme-Chr7:192057 Cme08g02049 Cme-Chr8:25862569 5.43E-146 dispersed
Cme08g02049 Cme-Chr8:25862569 Cme10g00140 Cme-Chr10:1009312 6.88E-123 dispersed
Cme09g00718 Cme-Chr9:8402832 Cme08g02049 Cme-Chr8:25862569 3.31E-14 dispersed
Cme08g02049 Cme-Chr8:25862569 Cme03g02180 Cme-Chr3:28832662 3.19E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65112 PF00069 Pkinase 9.50E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02049 K07760 - csv:101204557 608.216