Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g02066 | ATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGACCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCAAATATTATTCAGGCTCCGCTTTCTGCACTATTAGAGTATTCGGGTCTTCTTCGTGGCCGTCAAAGTCATCAAGAATCGGAGGCATTGATAAGTGCTCGATTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCATATCGAAGAATCGTCAGGTGCCACCAATGATGGAGAGGTTTCAATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCGAGGGATGTTAGCGGCCAGAATGCGGTGTCTTTGCAATCTGTTTCAGGGTTGGCTTCTGTGACCTTGGGGTCGGAGCTTAGCCAGGGTGAGTCTGCTAATGAACGTGGTGCAAGAGAGGGTATTCCTGAATCGATAAATGCAGGTGCTGATGGAGACACCTCGGAGGTAGCTGGAGGAAATAGCAGGGATTCTTCTTATCAGAGATATGACATTCAACAGGCTGCTCGGGGGATTGAACAGATACTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGATTCTTTGTGACAATATGGATAGCTGCTTTCATGTATAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATTTCTGTTTTGGTTTGCATTTCTCTTGCATTCACCATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGTGTCCTCCCAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATTATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGGTCAAGTGTGTTCTATTGATGTATTACAAGAACAGTAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCTGTTTGGTATCGTTTCTTTTTGAACAAAGAGTATGGGAGTCTATTTTCGTCACTATTGACCGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCGTATGCGACATCAGAGCAGGTCAGCGCAGCCGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTTCTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAATGGTTTGAGCGGGAAAGGACATGCCCATTGTGTAGGGCGTTGGTTAAACCTGCGGATCTCAGGTCATTTGGTGATGGATCAACAAGTTTGTTTTTCCAGGTTTTCTAA | 1416 | 44.77 | MEGSGSDPDSHRPASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALISARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAVSLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDTSEVAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF | 471 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26064667 | 26073197 | - | MELO3C025260.2.1 | Cme08g02066 | 336329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g02066 | 471 | SMART | ring_2 | 410 | 447 | IPR001841 | - | |
| Cme08g02066 | 471 | MobiDBLite | consensus disorder prediction | 136 | 174 | - | - | |
| Cme08g02066 | 471 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cme08g02066 | 471 | Pfam | Zinc finger, C3HC4 type (RING finger) | 408 | 451 | - | - | |
| Cme08g02066 | 471 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 1 | 471 | IPR044235 | GO:0061630|GO:1904294 | |
| Cme08g02066 | 471 | ProSiteProfiles | Zinc finger RING-type profile. | 410 | 448 | IPR001841 | - | |
| Cme08g02066 | 471 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 471 | - | - | |
| Cme08g02066 | 471 | ProSitePatterns | Zinc finger RING-type signature. | 425 | 434 | IPR017907 | - | |
| Cme08g02066 | 471 | CDD | RING-HC_RNFT1_like | 409 | 448 | - | - | |
| Cme08g02066 | 471 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 385 | 458 | IPR013083 | - | |
| Cme08g02066 | 471 | SUPERFAMILY | RING/U-box | 405 | 453 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme08g02066 | Cme-Chr8:26064667 | Cme10g01277 | Cme-Chr10:13660314 | 0 | dispersed | |
| Cme08g02066 | Cme-Chr8:26064667 | Cme09g01782 | Cme-Chr9:22267005 | 4.85E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g02066 | - | K22379 | csv:101205267 | 914.45 |