Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02076 ATGCCGTCGATGTGGAGGGATTGTGTGTGCGTGTTTCTGCTGTTGTGTTGTTCATCCATACTTCTTTCTGGTGCTGCTAAAACAGAGCCATCTGATGTTAAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCTGTGGACCAGCTTATCAGTTGGAGTAAAGGAGATCCTTGCAAAGATAATTGGATTGGAGTAATATGTTCTAATGGAGCTGTTGGGAACTTACGTGTCAAAGAAATCCATCTATTGAATAAAAACCTATCTGGAAATTTAGCTCCCGAGATCAGTCAATTGTCAGCGCTTGAGAAGCTACTCCTAAATGGAAATAAGCTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTGTAAAACTCATCCGATTCCAAATAGATGAGAATCAAATTTCAGGGCCTATCCCAAAATCATATGCTAACTTGGCCCGTCTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACATGCTTGTAGATAACAATAATTTGTCGGGTTCTCTGCCACCAGAATTTTCTACCATGCCAGTGCTACGCATTCTGCAACTTGATAGCAACAACTTCGAAGGGGAAATTCCAGCATCTTATGAAAATTTTCCTGAATTAGTGAAATTAGATCTTAGCTGGAACCATTTTACTGGACCCATACCCCCTTACAACCTCTCTTCTAGAATGACAACATTAATTTTGTCAAACAACCAGCTGAATGGATCAATACCCAGAAGTTTCTCCAATCTTCCTTTCCTCCAGAAACTGTCACTTGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGAAAATGTCCTTTGATTCAAGTGACCGACTTACACTCGATCTTCGAAACAATTCGTTTTCTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGAAACCTGCTTTCTATAGTGTTCTCATTCAACCATCTTTCATTCTTTAGGCTTGGAGGGAATCCAATCTGCAAAAATCAGAGCGGACAAAACACTGAAAAGTTCTGTAAATCAAAAAGTGTAGAGGATGGGCTTCATAGAAGCTCAAGCAGTTCCAGTAAAACATGTCCAGTTAGCAGTTGTCCAACTGACAGTTACTTTGAATTAGTGCCAGACACTCCTGACCCATGTTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAAAGTCCAAGCTTTTCCTACTTTCCTCCATACATGAATTCATTTGAAGCGTATCTGTCAAAGGAACTCAGTTTGGTGAAGCATCAATTGTTAATCGATTCGTACGATTGGGAGGGTTCTCGCCTGCGGATGTATCTGAAGATTTTTCCATCATTTGATAGTGGTACTCATAAATTGGATGTAAATGAGACATTTCTAATTACAGAGAAATTTATGTCATGGAATTTTACCCGTAATGACGTGTTTGGCCCATATGAGCTTCTCAACTTCACAATCCCTGACCGTCTTCAGACTGCTTCAACGATTCATCTGAAAATTGATGGTGTGAAAGCATTTTCATTCAAGGACATGCAATTGGCTACTGGAAATTTCAACCACTCAAGTCAAGTTGGGCGAGGAGGTTATGGCAAGGTCTATAAAGGCATACTATCAGATAACTCTGTTGTAGCCATTAAGCGTGCAGAAAAAGGATCCTTGCAAGGCCAAAAAGAATTTTTGACCGAGATAAAACTCTTATCACGGTTGCATCACCGAAACTTAGTATCCCTAATAGGATACTGTGATGAAGAAGGGGAACAATTTCAGGTATTGACCGTAGCAAATATTTTATTTGTTCTGAACCCTAATCTATGCCCAATTGCCCATCGCCCCCCATTGTACTTGATTAAAACTGCTCTTGGGACTAGACATATCTGGTATCCCGTGTTGCCTCTTAGATCCGTTTTCTTTTGCATCGAAAATTTTGGTTGCACCATTAACTTCGACTGTTCTATAGCAGACGAAAGTACATCAACAGTAAGACTGAATTTTCGTATGAGATTACGAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTTCTCGATGCTAAGTTCACGGCTAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTAAATTACGAGGGGGACGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTTTTAACCCATAAACTGACAGACAAAAGTGATGTCTATAGCCTAGGAGTTGTATTCTTGGAGCTCTTAACGGGCATGCACCCTATTCAGCACGGCAAAAACATTGTCCGTGAGGTAAAATTGGCACATCAAACGGGAACAATTCTTTCAATTGTAGACACAACGTTGGGTTCTTTCACACCTGAGTGTTTAGAGAGGTTTGTTGCTTTAGCCATCAGTTGTTGCCATGACAATCCCGAAGAACGGCCGTCCATGCTAGTTGTGGTGAGGGAGTTGGAGAACATATTGAACACGATGCCTGACGATAGTGGCGCACTGGATTCAGACTTGTCAACGAAATCAAGTGCCAGACTACCATCCTCACCAACATCAATGTCCGGCTTCAGCCGAGATCATTTTGCATCGGGAAGTACTTCAGGGAGCGATCTCATCAGTGGCGTCATGCCAACCATCAGACCTCGATGA 2757 41.6 MPSMWRDCVCVFLLLCCSSILLSGAAKTEPSDVKALLAVKRSLIDPVDQLISWSKGDPCKDNWIGVICSNGAVGNLRVKEIHLLNKNLSGNLAPEISQLSALEKLLLNGNKLSGSLPDELGNLVKLIRFQIDENQISGPIPKSYANLARLKHLHFNNNTLSGEIPSELSKLPKLIHMLVDNNNLSGSLPPEFSTMPVLRILQLDSNNFEGEIPASYENFPELVKLDLSWNHFTGPIPPYNLSSRMTTLILSNNQLNGSIPRSFSNLPFLQKLSLENNFLNGSVPSALWEKMSFDSSDRLTLDLRNNSFSDISGSTNPPANVTLRNLLSIVFSFNHLSFFRLGGNPICKNQSGQNTEKFCKSKSVEDGLHRSSSSSSKTCPVSSCPTDSYFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMNSFEAYLSKELSLVKHQLLIDSYDWEGSRLRMYLKIFPSFDSGTHKLDVNETFLITEKFMSWNFTRNDVFGPYELLNFTIPDRLQTASTIHLKIDGVKAFSFKDMQLATGNFNHSSQVGRGGYGKVYKGILSDNSVVAIKRAEKGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQFQVLTVANILFVLNPNLCPIAHRPPLYLIKTALGTRHIWYPVLPLRSVFFCIENFGCTINFDCSIADESTSTVRLNFRMRLRIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLNYEGDVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPIQHGKNIVREVKLAHQTGTILSIVDTTLGSFTPECLERFVALAISCCHDNPEERPSMLVVVRELENILNTMPDDSGALDSDLSTKSSARLPSSPTSMSGFSRDHFASGSTSGSDLISGVMPTIRPR 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26158878 26169629 - MELO3C025254.2.1 Cme08g02076 336339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02076 918 Pfam Protein tyrosine and serine/threonine kinase 539 856 IPR001245 GO:0004672|GO:0006468
Cme08g02076 918 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 507 887 - -
Cme08g02076 918 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Cme08g02076 918 SUPERFAMILY Protein kinase-like (PK-like) 521 872 IPR011009 -
Cme08g02076 918 SUPERFAMILY L domain-like 29 346 - -
Cme08g02076 918 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 504 - -
Cme08g02076 918 MobiDBLite consensus disorder prediction 868 909 - -
Cme08g02076 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Cme08g02076 918 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Cme08g02076 918 ProSiteProfiles Protein kinase domain profile. 536 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02076 918 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cme08g02076 918 Gene3D Phosphorylase Kinase; domain 1 507 610 - -
Cme08g02076 918 Gene3D Transferase(Phosphotransferase) domain 1 670 876 - -
Cme08g02076 918 Gene3D Ribonuclease Inhibitor 183 300 IPR032675 -
Cme08g02076 918 MobiDBLite consensus disorder prediction 867 918 - -
Cme08g02076 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 507 887 - -
Cme08g02076 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 504 - -
Cme08g02076 918 SMART serkin_6 536 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02079 Cme08g02076 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02076 Cme-Chr8:26158878 Cme05g01796 Cme-Chr5:26890858 9.37E-60 dispersed
Cme09g00691 Cme-Chr9:7824311 Cme08g02076 Cme-Chr8:26158878 1.26E-37 transposed
Cme10g00370 Cme-Chr10:2370251 Cme08g02076 Cme-Chr8:26158878 6.87E-32 transposed
Cme12g00002 Cme-Chr12:55338 Cme08g02076 Cme-Chr8:26158878 6.05E-91 transposed
Cme04g02800 Cme-Chr4:33066024 Cme08g02076 Cme-Chr8:26158878 1.54E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65113 PF07714 PK_Tyr_Ser-Thr 6.60E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02076 - - csv:101210187 1488.78