Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02089 ATGAGGCTACAGTCCCTTCTTGCAGCATCATCTTTACTCTTACTCATTTATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCAGAAAGCTCTTTTGGATTTTATTTCAACGGTTCCCCATGGTCGAAAAATTAACTGGGATCCTTCTACCCCGGTCTGCACTACTTGGGTTGGCATCACTTGCACTTCAGACCTCTCAAATGTGCTTGCTCTCAGGTTGCCTGCAATTGGACTGTATGGTCCAATCCCGGCCAATACTCTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAACGGAAATCTTCCATCAGATGTGCTATCCCTTCCCACCCTAAAGTTTTTGTATCTCCAACATAATAACTTTTCTGGTAAGGTACCTTCTTCCCTCTCTCCTAGTCTTACCTTCCTTGATCTGTCCTTCAACTCTCTAACTGGAAATATTCCAAAATCGGTACAAAACTTAACGCACCTCACTGGCCTCAACGTTCAAAACAACTCCCTGAATGGATCCATTCCTGATATAGGTCACCTAAGGCTTAAGCAATTGAACTTGAGCTACAACGAGCTCAGCGGTCCCATTCCTGCTTCACTGCAGTCATTTCCCACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCACCTTTAAAAAATTGCTCAGTTGGTGCTCCCTTACCTTCTCCATCGCCTGCTTCGTTTCCCCCGCCAAAGAAAAAGAGTGAAAAGAAAATAAATATTGGAGCTATCGTTGCCATCGGCTTAGGTGGTGCTGCCGTGCTCTTCCTCCTTGTATTATTGATTGTTGTCTGCTGTATGAAAAAAAAAGATGGTGAAAGCAGTGCTGCTGATGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTTGGAAGTGGGGTACAAGAGCCCGAGAAAAATAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCCTCTGCGGAAGTACTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAAGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGCCAGCATCCCAACGTCGTCCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGTTGCTGGAAGTTTTTCGGCACTACTCCGTGGAAGTCGAGAAGGCGGGCGAGCACCACCAGACTGGGAAACAAGATTGAAGGTTTCACTGGGGTGTGCCAAAGGCCTTGCACATATTCATTCAGCAAGTGGGGGAAAATTCATCCACGGGAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCCGAATGGTTGTATTTCAGATTTTGGCTTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTAGAAGCGTAGGTTATCGTGCTCCGGAGGTAATCGAGACTCGAAAATCAACTCAAAAGTCGGATGTTTACAGTTTTGGAGTTGTTTTGCTAGAGATGTTGACTGGGAAAGCGCCATCCCAATCGCCAGGCCGTGACGATGTTATAGACCTTCCGAGATGGGTCCAGTCTGTAGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATCGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTACCAGATATGAGACCAACAATGGACGAAGTTGTTAGGATGATTGAGGAAATTCGATCATTACACTCGGGAACTCGACCATCATCAGAAGATAACAAAGCCGGGGAAGGGGACGGGGACGGGGACGGGGACGATGACTTGAATACTCAGACCATGTAA 1923 45.35 MRLQSLLAASSLLLLIYFLSFIAADLNSDQKALLDFISTVPHGRKINWDPSTPVCTTWVGITCTSDLSNVLALRLPAIGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPTLKFLYLQHNNFSGKVPSSLSPSLTFLDLSFNSLTGNIPKSVQNLTHLTGLNVQNNSLNGSIPDIGHLRLKQLNLSYNELSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPASFPPPKKKSEKKINIGAIVAIGLGGAAVLFLLVLLIVVCCMKKKDGESSAADVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDPNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVIDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMDEVVRMIEEIRSLHSGTRPSSEDNKAGEGDGDGDGDDDLNTQTM 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26503489 26508066 + MELO3C025233.2.1 Cme08g02089 336352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02089 640 Gene3D Phosphorylase Kinase; domain 1 304 410 - -
Cme08g02089 640 MobiDBLite consensus disorder prediction 608 624 - -
Cme08g02089 640 SUPERFAMILY L domain-like 39 225 - -
Cme08g02089 640 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02089 640 PANTHER OS05G0588300 PROTEIN 9 621 - -
Cme08g02089 640 ProSiteProfiles Protein kinase domain profile. 335 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02089 640 Gene3D Transferase(Phosphotransferase) domain 1 413 625 - -
Cme08g02089 640 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Cme08g02089 640 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Cme08g02089 640 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cme08g02089 640 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Cme08g02089 640 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Cme08g02089 640 MobiDBLite consensus disorder prediction 608 640 - -
Cme08g02089 640 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Cme08g02089 640 MobiDBLite consensus disorder prediction 287 310 - -
Cme08g02089 640 Gene3D Ribonuclease Inhibitor 140 229 IPR032675 -
Cme08g02089 640 CDD STKc_IRAK 341 606 - -
Cme08g02089 640 PANTHER OS05G0480400 PROTEIN 9 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01293 Cme-Chr2:18860631 Cme08g02089 Cme-Chr8:26503489 0 dispersed
Cme06g01065 Cme-Chr6:7781833 Cme08g02089 Cme-Chr8:26503489 0 dispersed
Cme08g02089 Cme-Chr8:26503489 Cme11g01678 Cme-Chr11:24777222 0 dispersed
Cme08g02089 Cme-Chr8:26503489 Cme05g01954 Cme-Chr5:28090976 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65114 PF00069 Pkinase 1.40E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02089 - - csv:101210437 1099.35