Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02098 ATGACATCTGGTCAGCCCTTGCTGGCTTCATCAGAATCTCCCTCAGTTATTGAATACAGATCCAAATCTCGAAATCGTGGTTCGGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGGTCATAGTGACATTGTGGATGTGAAGGAAAACTGCGCCAGCCCTTTTGGAGATAACGCTTGGAGTGGAGAGAATTGCCTCAGAAGGTCTACTTCGCTTTCTAGGAAGAGGCAGTTTTCTACTGTTGGCTCTCTGCTTTCTCAGCAGTTTTCTTCTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGATGCATAATATTAATGATAATAACCCTGAAAGCTTCGAACTTTCTAGGGTCCAGGAGAAGTTGCATAAAGCGCAAAGAAGTCGTCATAAGAGTATGCAGTTTGAGGATAATTTACAGCATGACGATAATCCTAGGTTGATATACATCAATGATCCAAGGAGAACCAATGACAAGTATGAGTTCACTGGAAATGAGATAACCACCAGCAAGTACACATTGATTACTTTCTTGCCAAAGAACCTCTTTATTCAGTTCCACCGGGTAGCCTATCTTTATTTTCTTGCTATTGCCGCGCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACGGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTCACAGCTATTAAAGATGGTTATGAGGATTGGCGTAGACACAGATCTGATCGTAATGAGAACAATAGACAGGCTTTGGTGTTTCAGTCTGATGATTTTCGATTGAAAGTATGGAAAAAAATACGTGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAAGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCTAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAAACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTCGCTGAAGGGTGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATCTATGAGTTCACTGCCAATATGGAGTTCAACAGCCATAAATTTCCGCTCAGTCAATCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGGCAAGAGACAAAAGCCATGTTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACCGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGCTTATGGCTTGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACAAATGGGGCTGATAATGGTAAGAGGTATAGGTTTTATGGAATACCTATGGAGACATTTTTCTCCTTCTTGAGTTCTATTATAGTGTTTCAGATTATGATACCAATATCCCTTTATATTACAATGGAGATGGTGAGACTGGGCCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAGCCTCTTCCTCAAGGTTCCAGTGCAGATCATTGAATATCAATGAGGATCTTGGTCAAGTTCGCTATGTATTTTCTGATAAAACAGGAACACTTACGGAAAACAAAATGGAATTTAAAAGGGCAAGTGTGCATGGGAAGAATTACGGGAACAACTTGTCTGAGGAATATCCATCAATGCTGTATTCCATCCCAGCAACATTAGGCAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACTGAACTTATCAAATTGTTGCACAAGGACCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCACATGGATGACAGATCTAATTATGCAAATGGTGAATTGCTCGAGGAGGGTTTTGAAACTATTGATTATCAGGGGGAATCCCCTGATGAGCAAGCACTAGTTGCTGCAGCCTCTGCTTATGGATATACCCTTTTCGAGCGCACATCTGGGCATATTGTTATTGATGTCAATGGTGAGGACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTTGATAGTGTTCGAAAAAGAATGTCTGTCGTCATCAGATTCCCTGACAACACTATAAAGGTGCTGGTAAAAGGTGCCGATACTTCGATGTTGAATATTATAGGCATTGACTCTGATAGGGATGAATTTATCCAGCAGACTACTCAGAACCATTTGTGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCAAGAGATCTAAATGATTCTGAATTTGAGTTGTGGCAGAGCAGATATGAGGATGCCAGTACTTCTTTAACTGAAAGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGCGATCTAAAGCTTTTGGGTGCAACTGCCATCGAGGACAAGCTTCAAGATGGTGTACCTGAAGCTATTGAATCTCTTCGACAGGCAGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATTGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAGTTATCAATGGAAATTCAGAGAATGATTGCAGGCAACTTTTAGCTGATGCTATGGCAAAATATGGTATTAAATCAACACAGTGTGGAAGCCAAAGGCCGAAGCTTAGGAATTGTGAGAATGAATGTCATGATCATGATATACCAGAGACATCTAGTATGTCAGACTTTAGTGAAGGGAAAGAAGACGTAACTGATAAACCACTAGCTCTAATAATCGATGGAAACAGTTTGGTGTACATTTTGGAGAAGGAATTGGAGTTGGAGCTTTTTGACCTTGCGACTTCATGCGATGTTGTGCTATGCTGTCGTGTCGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTGGGTGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTTATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTTTGAAAAGATTACTACTAGTACATGGACATTGGAACTATCAGCGTGTAGGCTACATGGTTCTTTACAACTTTTACCGCAATGCCGTTTTTGTCTTGATGCTATTCTGGTACATTCTATGCACGGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCCGTTATTTATACGTCTATTCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTCACAAAACCTTACTCCAGTATCCTATGCTCTATGGTGCTGGTCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTTCCTTTGTACATTTACAAGGAGAGTACAATTGATATATGGAGCTTGGGAAGTTTGTGGACGATAGCAGTTGTTATCCTTGTAAATGTACACTTGGCGATGGACGTTCAACGTTGGGTATATATTACACATGCTGCAGTCTGGGGATCCATAGTCATAACATATGCTTGCATGGTGGTGTTGGATTCTATACCCGTTTTTCCTAACTACTGGACGATCTTTCATCTGGCTAAGTCTCCAACCTATTGGCTGACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGTTATCTATTCAAAGTTGTGAATCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAGAGAAGCCGAGGTACTGAGAAAACGAAAAGGTCGAGAACAAATAGGCTCAAAGCGAGATCGAGATTCCAATTAA 3897 41.54 MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASPFGDNAWSGENCLRRSTSLSRKRQFSTVGSLLSQQFSSGYPTQDRRRLVSWGAMEMHNINDNNPESFELSRVQEKLHKAQRSRHKSMQFEDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNSHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKERLDTLPYYRKRYFTNGADNGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRASSSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEEYPSMLYSIPATLGRRRWKLKSEVAVDTELIKLLHKDLNGDEKIAAHEFFLTLAACNTVIPIHMDDRSNYANGELLEEGFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGEDLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLNIIGIDSDRDEFIQQTTQNHLCEYSMEGLRTLVVAARDLNDSEFELWQSRYEDASTSLTERAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIVINGNSENDCRQLLADAMAKYGIKSTQCGSQRPKLRNCENECHDHDIPETSSMSDFSEGKEDVTDKPLALIIDGNSLVYILEKELELELFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSHKTLLQYPMLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKGREQIGSKRDRDSN 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26574399 26582000 + MELO3C025224.2.1 Cme08g02098 336361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02098 1298 SUPERFAMILY Calcium ATPase, transmembrane domain M 175 1268 IPR023298 -
Cme08g02098 1298 Gene3D - 816 1041 IPR023214 -
Cme08g02098 1298 SUPERFAMILY Calcium ATPase, transduction domain A 258 400 IPR008250 -
Cme08g02098 1298 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 175 1276 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme08g02098 1298 Gene3D - 526 543 - -
Cme08g02098 1298 Gene3D - 237 404 - -
Cme08g02098 1298 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 152 1296 - -
Cme08g02098 1298 CDD P-type_ATPase_APLT_Dnf-like 177 1161 - -
Cme08g02098 1298 Gene3D - 557 575 IPR023299 GO:0000166
Cme08g02098 1298 Gene3D - 655 799 IPR023299 GO:0000166
Cme08g02098 1298 Pfam haloacid dehalogenase-like hydrolase 544 860 - -
Cme08g02098 1298 Gene3D - 544 556 IPR023214 -
Cme08g02098 1298 SUPERFAMILY HAD-like 542 1047 IPR036412 -
Cme08g02098 1298 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 553 832 IPR023299 GO:0000166
Cme08g02098 1298 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 152 1296 - -
Cme08g02098 1298 Pfam E1-E2 ATPase 259 505 - -
Cme08g02098 1298 ProSitePatterns E1-E2 ATPases phosphorylation site. 549 555 IPR018303 -
Cme08g02098 1298 SFLD p-type atpase 531 1052 IPR044492 -
Cme08g02098 1298 SFLD C1.7: P-type atpase like 531 1052 - -
Cme08g02098 1298 Pfam Phospholipid-translocating ATPase N-terminal 161 226 IPR032631 -
Cme08g02098 1298 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 480 571 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme08g02098 1298 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 972 1087 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme08g02098 1298 Pfam Phospholipid-translocating P-type ATPase C-terminal 1029 1269 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00305 Cme-Chr1:2276988 Cme08g02098 Cme-Chr8:26574399 0 dispersed
Cme03g01122 Cme-Chr3:20705157 Cme08g02098 Cme-Chr8:26574399 0 dispersed
Cme08g02098 Cme-Chr8:26574399 Cme10g00473 Cme-Chr10:2997439 0 dispersed
Cme08g02098 Cme-Chr8:26574399 Cme10g00310 Cme-Chr10:2035551 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02098 K14802 - csv:101206692 2523.43