Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02113 ATGGCACAATCAAACATTGGATATGCTGAAACAGATCCTTCTGGTCGCTATGGACGGTTCAGAGAAATTTTAGGCAAAGGAGCAACGAAAACAGTATATAAAGGTTTTGATGAGGTTCTTGGAATTGAAGTGGCTTGGAACCAAGTCCATCTCAAAGATGTCTTCCATTCCCCTGAAGAGCTAGAACGTTTATACTCAGAAGTTCATCTCCTCAAGAACCTCAACCACAACTCGATCATCCGATTCTACACTTCTTGGATCGATACTCATCGCAGAACGTTCAACTTCATCACTGAAATGTTCACGTCCGGCACCCTTAGAGAGTATCGACAAAAGTATCAAAACATTGACATCGAAGCAATCAAGAATTGGGCTCGTCAAATCCTACACGGCCTTGTTTATCTTCACGGTCATGATCCACCTGTAATCCATAGAGACCTAAAGTGTGATAATGTATTCATCAATGGCCATCTTGGGCAAGTTAAGATTGGTGACCTCGGACTCGCAACAATCCTTCATGGTTCTCAAAATGCTCATAGTGTTATAGGTACACCAGAGTTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTACTCGTTTGGAATGTGTATGATTGAAATGCTTACTTTAGAGTATCCTTATAACGAATGCTCTAACCCTGCTCAGATATACAAGAAAGTCACTTCAGGAAAATTGCCCAATGCATTCTATGAGATCAAAGACTTGGAGGCCCAAAGATTTGTGAGAAAATGTTTGGAGAATGTTTCAAAGAGGGTTTCTGCTAGAGAGCTCTTGCTTGAGCCATTTCTAGCACCTTCCAACAGTAACAATGTCTCTCATAATGAAGAGTTGGTGTCTTCATCTTTATCTCCAGAGAAATCAATAATGGCAAGAAGAACAGATTTAGCCATTTCAGGATCAATCAATCCCAAGGATGATTCAATTTTTCTTAAAGTGCAGATCAAAGTGAAGAACGGTAAATCTAAGAATGTATATTTTGCATTCGACATCTTAAACGACACTGCAATCGACGTTGCAACCGAGATGGTTAAAGAGTTGGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAGAGAAGGAGATATCCTCATTGATTCCAGATTGGGAGGAATGGAAGTTCCCAGAAATCCACCATCAAGATAGCTTCAACTACGAACAAGATCACAATGGCAACGACGATAACGACGATGACGATGACGACGAAAACTATGCAACACCACATCCTTTCTATTATTGTGGCTCTTCTCATGGCTCCTCCTCAGATTCTCTTCATGATTTCTACCCTTTCCGTGAGAACCCCAATCATCATTTTGGAGGGATGGACACTTCTATTACCACTGAATGGTTTCGAGAGGATGATACAAGTTCTTGTTGTTCTCTCAATTCCTTCGATTACTCTGATTTAAGTTTTTACTCAAACGATGAAGATGAGTATGAATATGACTCAAATATCAAAGGAAGAGAGTCTCGATACATCTCAACAACCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACTCGCACCATTTGAGGCACAAGGACACTAGAATTATCCCCAATCGAGAAACATTCGAAAATGGATCTCTATCAAATAACTCACCTAGAATTACTAGGGTGAAATCGATGGTGAACCTTCGTAGCGAGACGTTGCACCGGTACTTAGTAGAGACGTTGTTGAAGAAGCGCTTGTTTAATACGGTGGGTGCAATGGAGAATATTGGATTCCAAAAGCCGTAG 1794 40.52 MAQSNIGYAETDPSGRYGRFREILGKGATKTVYKGFDEVLGIEVAWNQVHLKDVFHSPEELERLYSEVHLLKNLNHNSIIRFYTSWIDTHRRTFNFITEMFTSGTLREYRQKYQNIDIEAIKNWARQILHGLVYLHGHDPPVIHRDLKCDNVFINGHLGQVKIGDLGLATILHGSQNAHSVIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYNECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRVSARELLLEPFLAPSNSNNVSHNEELVSSSLSPEKSIMARRTDLAISGSINPKDDSIFLKVQIKVKNGKSKNVYFAFDILNDTAIDVATEMVKELEIISDWDPLEIAVMIEKEISSLIPDWEEWKFPEIHHQDSFNYEQDHNGNDDNDDDDDDENYATPHPFYYCGSSHGSSSDSLHDFYPFRENPNHHFGGMDTSITTEWFREDDTSSCCSLNSFDYSDLSFYSNDEDEYEYDSNIKGRESRYISTTKQPTRFCPTMKIDSHHLRHKDTRIIPNRETFENGSLSNNSPRITRVKSMVNLRSETLHRYLVETLLKKRLFNTVGAMENIGFQKP 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26846230 26851783 + MELO3C025211.2.1 Cme08g02113 336376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02113 597 SUPERFAMILY Protein kinase-like (PK-like) 20 277 IPR011009 -
Cme08g02113 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Cme08g02113 597 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 597 - -
Cme08g02113 597 ProSiteProfiles Protein kinase domain profile. 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02113 597 Gene3D - 319 388 - -
Cme08g02113 597 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02113 597 Gene3D Phosphorylase Kinase; domain 1 3 99 - -
Cme08g02113 597 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 3 597 - -
Cme08g02113 597 CDD STKc_WNK 16 276 - -
Cme08g02113 597 MobiDBLite consensus disorder prediction 399 420 - -
Cme08g02113 597 SMART serkin_6 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02113 597 Gene3D Transferase(Phosphotransferase) domain 1 101 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02113 Cme-Chr8:26846230 Cme12g01658 Cme-Chr12:23634019 2.94E-145 dispersed
Cme11g01446 Cme-Chr11:21379247 Cme08g02113 Cme-Chr8:26846230 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65118 PF00069 Pkinase 4.70E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02113 K08867 - csv:101207665 1121.69