Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02117 ATGGCCGTTTCTCCCCACTCTTTCCCTCCGCGTAAACGCCGCCCCTCCGCCGCTGCCTTCGTCTCCCCCAAACTCTCCGCCCCAATCCTCCTCCAATCCCTCCTCTCCCTCTCCCAGGAAATCTCTTCCACTAAACCCCTCAAATTCCTTCTCCACCGCTACTCCATTTCCATGATCCGCAAATCCTTATTGCTCGAAATTATCCTCCACGACCTCCTCCGCCGTCTCCCGATTCCCTCCCTCTCCCCCTCCGCTTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAAAGAATCAAAACCCTGCTCGAAGATTGTTCTAACGGAAGCAACATCTGGCTACTCACTCAAAACCAATCCATCGCTAACAATTTCCACGAACTCACTTTGGATTTATCCACTCTGCTCGATATCTTCCCTGTTAAAGACGCTGGTTTAACCGAAGACGTTGAAGAATTGTTTTACCTCTTGAGAAATCAAACCTCTGAATCCAGCGTGTTCCTCGATCCAAGAGATGAAGCTCTCCGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATTGTTCCGGATTATTCCGAATTGTTAGAGATTTTTACCATGATTGATATCCGTGATTCCTCTAGTTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACCGATGAGAAATCGAGATCTGATGTGGTTGCTTTGATCGGGTTAGTTCGTTACGCGAAATGCGTTTTGTATGGAGCGTCGACGACGGCGGAATACGGTTTCCAACGGAAAGATTCGATTTCCGATTTGCCTGTACCGGCAGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCGGTTGTCGTGGCCACAGGACATACGTACGATCGTGCGGCGATTACGTTTTGGATTGAATCTGGGCACAACACGTGTCCAAAGACAGGTCAGACCCTGGCCCATACGAACCTAATACCGAACCGGGCATTGAAAAATTTGATTGCAATGTGGTGCCGTCAAGAAAGAATTCCGTTTGATATAACGGAAAGCAGTAAGGAGAGAGTCAACGACGTTACGTTAAATAAAGCAGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGTTGACTCTTCTGTGAACGATGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTACCGTTACTCGTCCGATATCTCAACTCCAATAACCCGATTCTCCAAGTGAACGCCGTCACGACGGTGCTCAACCTCTCGATTTTTGAGTCGAACAAATCTTTGATAATGGAGACCGATGGTGCGTTGATCGGAGTTATCGAGGTACTCCGGTCCGGCGCGACTTGGGAAGCCAAAGGAAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACAGGCGGAGATTGGGGAGGAAGACTCGTGTCATAAGGGGACTGCTTGATTTGGCGAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTTACGATTTTGACATTAGCGGGCGATAGAGAGACTGTTGGGAGGTTAGTCGAAGGTGGGGTTATGGAGACGGTGAGTTATTTGATGAACAGCTTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGATTTTATCTGATTAAGAAATTGGGGGTTGTATTGAGAGAGGGCTCCGACAGGGCCAGAGAGAGCGCTGCGGCGGCCCTGGTGACAATGTGCCGGCAAGGTGGATCGGAGATGGTGACGGAGCTGGCGTCGATGGCCGGGATTGAGAGAGTCATTTGGGAATTAATGGGGAGTGGGACGATGAGGGGTCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGGAAACGGCGGCGCGGGAGGAGATTCGATGACGGTTACATCGTCGAGAATCGGCGGCGAGTCAACGACGTTTGTTAGTTCGTCAAGAGGAGCAATTGTGCATAGCTAG 2070 50.1 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLHRYSISMIRKSLLLEIILHDLLRRLPIPSLSPSASLCLEEMYIVLQRIKTLLEDCSNGSNIWLLTQNQSIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNQTSESSVFLDPRDEALRFRVLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVVALIGLVRYAKCVLYGASTTAEYGFQRKDSISDLPVPADFRCPISLDLMQDPVVVATGHTYDRAAITFWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDITESSKERVNDVTLNKAALEAMRMTATFLVNKLATSVDSSVNDVVYELRVLAKTDPGSRGYIAQAGALPLLVRYLNSNNPILQVNAVTTVLNLSIFESNKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVGRLVEGGVMETVSYLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGVVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGAGGDSMTVTSSRIGGESTTFVSSSRGAIVHS 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26958988 26961266 - MELO3C025205.2.1 Cme08g02117 336380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02117 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 664 - -
Cme08g02117 689 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Cme08g02117 689 Coils Coil 209 236 - -
Cme08g02117 689 CDD RING-Ubox_PUB 275 317 IPR045210 -
Cme08g02117 689 SUPERFAMILY ARM repeat 374 646 IPR016024 -
Cme08g02117 689 SMART arm_5 401 441 IPR000225 GO:0005515
Cme08g02117 689 Gene3D - 63 141 IPR036537 GO:0007166
Cme08g02117 689 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Cme08g02117 689 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Cme08g02117 689 Pfam U-box domain 271 342 IPR003613 GO:0004842|GO:0016567
Cme08g02117 689 PANTHER U BOX DOMAIN-CONTAINING 11 664 - -
Cme08g02117 689 SUPERFAMILY RING/U-box 261 343 - -
Cme08g02117 689 Gene3D - 369 648 IPR011989 -
Cme08g02117 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Cme08g02117 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 350 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02117 Cme-Chr8:26958988 Cme12g01264 Cme-Chr12:20726204 2.26E-132 dispersed
Cme08g02117 Cme-Chr8:26958988 Cme12g01706 Cme-Chr12:23910004 3.54E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02117 - - csv:101205143 1253.81