Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02120 ATGCCGGCCTTCCACGACGACACCCCTCCCCCGGGTCTCCCCCGTGCCGACTCCTTGCCCGAGGGAATTCTCTTCGGTAAGTACGAACTCGGCAAGCTTCTTGGTTGTGGAGCTTTTGCCAAGGTCTACCACGGAAGAAACGTCCTCACAGGACAGAGTGTCGCCATTAAAGCTGTTAACAAACTCAAGGTTCTCAAAGGCGGTTTCACAGCGCATGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCCAACGTCGTCCGTCTCTTTGAAGTTCTAGCCACCAAGACCAAGATTTATTTCGTTATGGAGTATGCTAAAGGAGGTGAGCTCTTCGGGAAAGTTTCTAAAGGAAGGTTCAGTGAGAATCTCAGTCGTCGGTATTTTCAGCAGTTGATTACCGCCGTTGGATATTGTCATTCTCGAGGGATTTTTCATCGTGATTTGAAACCGGAGAATCTCCTTCTTGATGACAATTTCGATCTCAGAGTCTCGGATTTTGGGCTTAGTGCTCTTGCAGATCAGATTCGTCCCGATGGATTGCTTCATACGCTTTGTGGAACTCCGGCTTACGTCGCACCGGAGATTCTCGCTAAGAAAGGCTACGACGGCGCTAAAATCGATGTCTGGTCTTGTGGTATAATCCTCTATGTTCTTACTGCTGGATATCTTCCTTTCAACGATTCCAATTTAATGTCCATGTATCGGAAGATTTACAGAGGCGATTTCCGTTGCCCTAAGTGGACGTCTCCAGATCTGCAACGGTTTTTATCCAGACTTCTCGATACGAATCCCGAGACAAGGATTACTGTTGATGAGATTCAAAGAGATCCGTGGTTTGTGAAGGGATTTCAAGAGGAGAAGTTTCAATTTCAAGAACTCATCGAAGATCCTGCTTCCGAGGTTTACGGTGATGTGAACAATTCGAAATATTTGAATGCTTTTGATCTAATTTCGTTCTCACCTGGATTCGATTTGACTGGATTGATTAAAGAGACGGAGTTTTCTTCCTGCGTTGAGCGGTTTCTGTCCGCCGAATCGCCTGAGAAGATTATTACGAGGGTTGAGGAGGTTACAGAGTCGGAAAATGCAGCGGTGGAGAAGAACGGTTGGGGAGTGAAAGTGGAAGGACTTGACGGTGGATTCGTGGTGGTGATAGATATTTTCCGGCTGACGGAGGAATTGGTGGTAGTTGAGATTAAGAACAGAGTGAGGGAAACAGATCAAGATGGTGATCAAAGATGGAAAGATGTATTGAGACCTCAACTTGAGTGTTTAATCTACCGGTCGGATTGA 1302 46.47 MPAFHDDTPPPGLPRADSLPEGILFGKYELGKLLGCGAFAKVYHGRNVLTGQSVAIKAVNKLKVLKGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEYAKGGELFGKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALADQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGYLPFNDSNLMSMYRKIYRGDFRCPKWTSPDLQRFLSRLLDTNPETRITVDEIQRDPWFVKGFQEEKFQFQELIEDPASEVYGDVNNSKYLNAFDLISFSPGFDLTGLIKETEFSSCVERFLSAESPEKIITRVEEVTESENAAVEKNGWGVKVEGLDGGFVVVIDIFRLTEELVVVEIKNRVRETDQDGDQRWKDVLRPQLECLIYRSD 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27044887 27046388 + MELO3C026058.2.1 Cme08g02120 336383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02120 433 Gene3D Kinase associated domain 1, KA1 315 431 - -
Cme08g02120 433 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Cme08g02120 433 CDD CIPK_C 315 425 - -
Cme08g02120 433 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Cme08g02120 433 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02120 433 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 21 431 - -
Cme08g02120 433 PANTHER - 21 431 - -
Cme08g02120 433 Pfam NAF domain 312 370 IPR004041 GO:0007165
Cme08g02120 433 Gene3D Transferase(Phosphotransferase) domain 1 21 314 - -
Cme08g02120 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Cme08g02120 433 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02120 433 SUPERFAMILY Protein kinase-like (PK-like) 24 296 IPR011009 -
Cme08g02120 433 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02120 Cme-Chr8:27044887 Cme11g01444 Cme-Chr11:21356838 1.73E-180 dispersed
Cme08g02120 Cme-Chr8:27044887 Cme08g02122 Cme-Chr8:27131707 2.72E-138 proximal
Cme04g02657 Cme-Chr4:32252349 Cme08g02120 Cme-Chr8:27044887 7.59E-49 transposed
Cme11g01443 Cme-Chr11:21351973 Cme08g02120 Cme-Chr8:27044887 3.33E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65119 PF00069 Pkinase 1.50E-70 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02120 - K12761 csv:116403168 830.091