Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02122 ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAAGTGGCATGAGTGTGGCTATTAAAATTATTGACAAAGAAAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAAATCTCTGTCATGAGATTAATTAAGCATCCCAACGTCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACCAAGATTTACTTTGTCATGGAATATGTCAAAGGTGGCGAGCTATTCAACAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCATAGTCGAGGGGTATGCCATAGAGATTTGAAACCGGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGACTGCTCCATACTACTTGTGGAACCCCTGCTTATGTCGCACCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCGTGTGGAGTGATTTTATATGTTTTATTGGCCGGTTATCTCCCTTTTCATGATCCTAATCTAATGGAAATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTTCCCAACTGGTTTGCACCAGAAGTGCGCAAGCTGTTGTCAAAGATATTAGATCCTAACCCAAATACCAGGATATCAATTGCCAAAATAATGGGAAGTTCTTGGTTAAGGAGGGAGTTCAATGTGAAAGCACAAGTTAATGCAGCAGAGGAAGTGAAAGAAGGGGATCCTTTGGATGTTGATGCAGTTTTTGTGTCAGCAGCCGATGACAGAGACTCTGTTAAAGATCAGAAGCCAGAAATGGAAAAGCCATTGAATTTAAATGCTTTCGACATCATTTCCTTGTCATCAGGTTTTGATTTGTCAGGACTATTCGAGGAGGCTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCATGATCATCTCAAAACTGCAAGACATTGCAAAGTGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAATGAAGGTCGAAAAGGTGCCGTATGTATTGATGCAGAGATTTTTGAAGTTACCCCATCATTCCATATCGTGGAAATGAAGAAGTCAAACGGAGATACATTGGAATATCGCAAGATAATGAAAGATAATATAAGACCTGCTCTGAAGGACGTTGTGTGGACCTGGCAAGGCGAACACGAACAGCAACCAAGACAGCTATTACAAGCAGAACAACAAGGACATGAAACTCAACAACAATCTCCTAGTGATTCATTATAA 1407 39.87 MENKGAILMERYELGRLLGQGTFAKVYYARDIKSGMSVAIKIIDKEKILKVGMIDQIKREISVMRLIKHPNVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILYVLLAGYLPFHDPNLMEMYKKIGKGEFKFPNWFAPEVRKLLSKILDPNPNTRISIAKIMGSSWLRREFNVKAQVNAAEEVKEGDPLDVDAVFVSAADDRDSVKDQKPEMEKPLNLNAFDIISLSSGFDLSGLFEEADLKKEVRFTSNKPASMIISKLQDIAKCLKLKIKKKDRGLLKIEGCNEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDNIRPALKDVVWTWQGEHEQQPRQLLQAEQQGHETQQQSPSDSL 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27131707 27135085 - MELO3C026055.2.1 Cme08g02122 336385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02122 468 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02122 468 Gene3D Transferase(Phosphotransferase) domain 1 92 284 - -
Cme08g02122 468 PANTHER - 2 450 - -
Cme08g02122 468 Gene3D Kinase associated domain 1, KA1 311 437 - -
Cme08g02122 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cme08g02122 468 Pfam NAF domain 314 372 IPR004041 GO:0007165
Cme08g02122 468 MobiDBLite consensus disorder prediction 445 468 - -
Cme08g02122 468 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cme08g02122 468 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cme08g02122 468 CDD CIPK_C 318 432 - -
Cme08g02122 468 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cme08g02122 468 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Cme08g02122 468 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02122 468 CDD STKc_SnRK3 11 265 - -
Cme08g02122 468 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02122 468 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00513 Cme-Chr5:4722555 Cme08g02122 Cme-Chr8:27131707 1.23E-112 dispersed
Cme07g00116 Cme-Chr7:765253 Cme08g02122 Cme-Chr8:27131707 7.21E-180 dispersed
Cme08g00218 Cme-Chr8:1466632 Cme08g02122 Cme-Chr8:27131707 4.63E-177 dispersed
Cme08g02122 Cme-Chr8:27131707 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme08g02120 Cme-Chr8:27044887 Cme08g02122 Cme-Chr8:27131707 2.72E-138 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65120 PF00069 Pkinase 5.20E-76 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02122 K07198 - csv:101209068 861.292