Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02169 ATGACGTCTGAGAATTCTAGTGGAGGAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCAGTAGTGGACACTCTAAACAAGTGGAAGAAGTTGAATAATCAATTGGAGGATTTGGCTAAAGATGGAGGAGTAGAGGAAACTCGTAGAGTTCCAGCTAAGGGCTCCAAGAAAGGTTGCATGAGAGGGAAAGGAGGACCTCAGAATTCAGATTGCAATTTTAGAGGTGTTAGACAGAGGACATGGGGAAAATGGGTAGCTGAAATTAGAGAGCCAATTGCGAGTAACAATAATACCCGTTTGAAGAAGAAAGGCACTCGTTTATGGCTAGGCACTTTCTCCACTGCTCACCAGGCTGCTCATGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCTTTTGCTCGTCTTAATTTTCCTGATTCTTCTTCTCCTCCTGTTATGAAACCATTAACATCAGAGCATTCTGATACGATATCTCCTGTTGCTTCTTCCTCCTCTTCTTCTTCGTTCTTTAATGGAGTACCTGCAGAGAAAATGAAGGGCTGTTATTCAATGGACAAGCAAGAGAATTGTGAGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAGTAGAGTCCATTGCACAGATATTAAACCCAATTCATTTTATGATTCTAACATTGGGAACAGATCAGAAGGAAATATAATGGAAGGGTTAGCTGATGTTTTAAGAAGCCATGATCAGAATAGCCCTTCTGAGCTTTGTTTTAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTGAATGAATGCAATCAATATGTGCTACAGAAGCTTCAGAGTGATCCATATGGAAGAACTTACTGGATTCCAGCCGAGTGGGAGATCGGCGATCTTGGGTCTGCGACGGTGATGGAAGGAAAGCCAATGGAGATTGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGGGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGTGACCAGAGAGTTGATGATTGTAACAACTTTGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGAAAGTGGCTTGATTTATGCTTCCATGGATGA 1122 42.16 MTSENSSGGKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGGVEETRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNNTRLKKKGTRLWLGTFSTAHQAAHAYDEAAKAMYGPFARLNFPDSSSPPVMKPLTSEHSDTISPVASSSSSSSFFNGVPAEKMKGCYSMDKQENCEYESMEELKVKVEETARSRVHCTDIKPNSFYDSNIGNRSEGNIMEGLADVLRSHDQNSPSELCFKFEAMDTNGCNDLNECNQYVLQKLQSDPYGRTYWIPAEWEIGDLGSATVMEGKPMEIESYGDCMAFNRDLGLLLDRQKHMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27722698 27724734 + MELO3C026024.2.1 Cme08g02169 336432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02169 373 ProSiteProfiles AP2/ERF domain profile. 73 140 IPR001471 GO:0003700|GO:0006355
Cme08g02169 373 SUPERFAMILY DNA-binding domain 73 142 IPR016177 GO:0003677
Cme08g02169 373 SMART rav1_2 73 146 IPR001471 GO:0003700|GO:0006355
Cme08g02169 373 Pfam AP2 domain 72 132 IPR001471 GO:0003700|GO:0006355
Cme08g02169 373 MobiDBLite consensus disorder prediction 49 68 - -
Cme08g02169 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 279 - -
Cme08g02169 373 CDD AP2 72 142 IPR001471 GO:0003700|GO:0006355
Cme08g02169 373 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
Cme08g02169 373 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Cme08g02169 373 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Cme08g02169 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01916 Cme-Chr3:27268146 Cme08g02169 Cme-Chr8:27722698 1.17E-31 dispersed
Cme04g00507 Cme-Chr4:4159145 Cme08g02169 Cme-Chr8:27722698 2.77E-34 dispersed
Cme04g02197 Cme-Chr4:29206870 Cme08g02169 Cme-Chr8:27722698 1.23E-30 dispersed
Cme08g02169 Cme-Chr8:27722698 Cme03g01510 Cme-Chr3:24345359 1.79E-19 dispersed
Cme03g00283 Cme-Chr3:3598393 Cme08g02169 Cme-Chr8:27722698 2.28E-42 transposed
Cme11g01471 Cme-Chr11:21648965 Cme08g02169 Cme-Chr8:27722698 1.49E-49 transposed
Cme03g00266 Cme-Chr3:3423524 Cme08g02169 Cme-Chr8:27722698 2.07E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41874 PF00847 AP2 1.50E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02169 - K09286 csv:116403565 707.212