Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02177 ATGCTCTGTAATAAAAAAAAATATGCAGAAAGACGAGAGAAAGAAGAAACATCACCTCACAAAAAGCTATGGAGCAAGACGACAATCTCATTCCATTCAAACAGAACAACACTGATTCGAACATCTCTTAACACCAATTTCAATCTCGGCATCTTTCACACCATGGCCACAAGCGTCTCCCACTCTCCCGATTTCCGCCCTGAAGTTTCCGTTACGCCGCCGACCCACGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGCTCAATCGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTAGGCGGTGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAAGTGGAAGGTCCGGCTGGGCTCTACCGTGGAATTGGAGCAATGGGTTTAGGCGCAGGACCTGCACACGCCGTCTACTTCTCGGTATACGAGTTTGCGAAAGAAGGGTTTTCAATGGGGAATAAGAACAACCCATTAGCGCACGCCATCGCTGGAGTTTGTGCGACGGTGACGAGCGACGCCGTGATAACGCCGATGGATGTAGTGAAACAGAGGCTGCAGTTGGAGAATAGTCCTTATAAAGGAGTGGGGGACTGTGTGAGGAGGATTTTGGCTGAGGAAGGGATTGGGGCGTTGTATGCTTCTTATCGGACCACGGTTGTGATGAATGCACCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCTAAAAGGGGATTGAAGGAGGTGTCACCGGGAAGTGATGACGATGAGAGGCTGATTGTTCATGCTACGGCCGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGTCAGGGAGTGTGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGATACGTACTTGGGTGTGTGGTGAAGAAGGATGGCTACAACGGGCTGATGAAAGGATGGATTCCAAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTACGAGGCTTCCAAATCCTTCTTTCAACATCTCCACAATCACAACAACAATTAG 1101 50.32 MLCNKKKYAERREKEETSPHKKLWSKTTISFHSNRTTLIRTSLNTNFNLGIFHTMATSVSHSPDFRPEVSVTPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFAKEGFSMGNKNNPLAHAIAGVCATVTSDAVITPMDVVKQRLQLENSPYKGVGDCVRRILAEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSPGSDDDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYNGLMKGWIPRMMFHAPAAAICWSTYEASKSFFQHLHNHNNN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27804945 27808609 - MELO3C026017.2.1 Cme08g02177 336440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02177 366 PANTHER MITOFERRIN-1-RELATED 56 364 - -
Cme08g02177 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 79 163 IPR018108 -
Cme08g02177 366 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g02177 366 PRINTS Mitochondrial carrier protein signature 97 111 IPR002067 GO:0055085
Cme08g02177 366 PRINTS Mitochondrial carrier protein signature 84 97 IPR002067 GO:0055085
Cme08g02177 366 PRINTS Mitochondrial carrier protein signature 185 203 IPR002067 GO:0055085
Cme08g02177 366 PRINTS Mitochondrial carrier protein signature 227 245 IPR002067 GO:0055085
Cme08g02177 366 PRINTS Mitochondrial carrier protein signature 275 297 IPR002067 GO:0055085
Cme08g02177 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 266 356 IPR018108 -
Cme08g02177 366 PANTHER MITOFERRIN-LIKE 56 364 - -
Cme08g02177 366 Pfam Mitochondrial carrier protein 80 165 IPR018108 -
Cme08g02177 366 Pfam Mitochondrial carrier protein 267 358 IPR018108 -
Cme08g02177 366 Pfam Mitochondrial carrier protein 170 256 IPR018108 -
Cme08g02177 366 SUPERFAMILY Mitochondrial carrier 77 351 IPR023395 -
Cme08g02177 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 170 254 IPR018108 -
Cme08g02177 366 Gene3D Mitochondrial carrier domain 168 366 IPR023395 -
Cme08g02177 366 Gene3D Mitochondrial carrier domain 20 167 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02177 Cme-Chr8:27804945 Cme11g01725 Cme-Chr11:25323026 4.43E-146 dispersed
Cme08g02177 Cme-Chr8:27804945 Cme04g00398 Cme-Chr4:3170600 1.13E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02177 K15113 - csv:101210464 608.601