Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02292 ATGGCCCTATTCAAAACCAGCTCCATTCATGACCCACTCAATTGGGGTGTGGCTGCCGATTCCCTCAAGGGAAGCCACTTTGATGAGGTGAAGCGCATGGTAGAGGAGTATGAGAGGCCCCGTGTCCAGCTTGACGGTGAGACACTCACTATCTCTCAAGTTGCTGCTATTGCTACTAGGACTTCTGATGTTATTGTCGAGCTTTCAGAGTCTACTAGACTTGGTGTTAAAGCTAGTAGTGATTGGATTATGGAGAGTTTAAATAAAGGAACCGATAGTTATGGCATCACTACTGGATTTGGTGCTACGTCTCATAGAAGAACCAAACAAGGTGAGGCCCTCCAAAAGGAGCTTATTAGATTCTTAAATGCTGGGATATTTGATAGTGGGACTGAGTCAAGCCATACTTTGTCCCACTCGGCTACGAGGGCAGCCATGTTGGTGAGGACTAATACCCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATAACAAAACTTTTGAATCATAACATCACTCCATGTTTGCCTCTTCGTGGAACTGTTACTGCCTCTGGGGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGTCGACCAAACTCTAAAGCTACTGGTCCAAATGGTGAAAATCTTGATGCAAAAGAGGCTTTTATACATGCCGGTATTACTTCTGGGTTCTTTGAGTTTCAACCTAAGGAGGGTTTTGCTCTTGTCAATAGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTATTTGAAGCAAATATTTTAGCTGTTTTGTCTGAGATTTTGTCGGGCATCTTTGCTGAAGTTATGCAAGGAAAGTCTGAATTTACTGACCATTTAACCCATAAATTGAAGCATCATCCTGGACAGATTGAAGCAGCCGCAATCATGGAACACATTTTAGATGGGAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTTCAGAAGCCAAAACAAGATCGCTATGCTCTTAGAACTGCGCCTCAATGGCTTGGTCCATTAATTGAAGTTATTCGGTTCTCAACAAAATCCATTGAGCGAGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCAAGGAACAAAGCTTTACATGGAGGCAACTTTCAAGGAACTCCAATTGGAGTTTCTATGGACAACACTCGTCTTGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAACTCGTCAATGATTTCTACAGCAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATCGCTATGGCTTCATATTGCTCTGAGCTTCAATATCTCGCAAATCCAGTGACAAGTCATGTTCAGAGTGCTGAGCAACACAACCAAGATATTAACTCTCTTGGTTTAATTTCCTCGAGAAAAACTGCTGAAGCCATTGACATTCTAAAACTCATGTCTTCTACATTTTTAGTTGCTTTATGCCAAGCAATTGACTTAAGGCATTTAGAGGAAAACTTGAAGAGCACTGTTAAAAGCACTGTAAGCCTAGTAGCACAGAAGGTGCTGATAACGTCCTCTAATGGTGCACTTGATCCTTCAAGATTGTTCGAGAAAAACTTATTGAAAGTTGTCGATAGAGAGTACACTTTTGCCTATATAGATGACCCATGCAGTGCTATTTATCCATTGATGCAAGGATTGAGACAAGTTTTTATTGAGCATACACTTGCTAATAGTGATGATGAGAATAATGCAAACACTCCAATCTTCCAAAAGATTGCTATTTTCGAAGAGGAATTAAAGGCAACTTTGTCAGATAAAGTTGAAAGTACAAGGTTGGCCTATGAAAGTGGAAATGCGTTGATTAAGAACCAAATTGAAGAATGCAGATCTTACCCATTATATAGATTTGTGAGAGAAGAGTTGGGAATAAAATTATTAACCGGTGAAAAGGTGATATCTCCAGGAGAAGAGTGTGAAAAAGTATTCGCAGCTTTGTGTAAGGGAAAAATGATCCATTCTATCTTAGAATGTTTAAAGGAGTGGAATGGTGCTCCGATTCCTATAAGTTAG 2109 40.3 MALFKTSSIHDPLNWGVAADSLKGSHFDEVKRMVEEYERPRVQLDGETLTISQVAAIATRTSDVIVELSESTRLGVKASSDWIMESLNKGTDSYGITTGFGATSHRRTKQGEALQKELIRFLNAGIFDSGTESSHTLSHSATRAAMLVRTNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKATGPNGENLDAKEAFIHAGITSGFFEFQPKEGFALVNSTAVGSGLASIVLFEANILAVLSEILSGIFAEVMQGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTAPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDINSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSLVAQKVLITSSNGALDPSRLFEKNLLKVVDREYTFAYIDDPCSAIYPLMQGLRQVFIEHTLANSDDENNANTPIFQKIAIFEEELKATLSDKVESTRLAYESGNALIKNQIEECRSYPLYRFVREELGIKLLTGEKVISPGEECEKVFAALCKGKMIHSILECLKEWNGAPIPIS 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29944425 29946806 + MELO3C014222.2.1 Cme08g02292 336555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02292 702 PANTHER HISTIDINE AMMONIA-LYASE 9 701 IPR001106 -
Cme08g02292 702 Gene3D - 3 248 IPR024083 -
Cme08g02292 702 SUPERFAMILY L-aspartase-like 11 701 IPR008948 GO:0003824
Cme08g02292 702 Gene3D - 515 636 IPR023144 -
Cme08g02292 702 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 11 692 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme08g02292 702 Pfam Aromatic amino acid lyase 49 521 IPR001106 -
Cme08g02292 702 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 9 701 - -
Cme08g02292 702 Gene3D Fumarase/aspartase (Central domain) 249 697 - -
Cme08g02292 702 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 184 200 IPR022313 GO:0016841
Cme08g02292 702 CDD PAL-HAL 47 512 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02292 Cme-Chr8:29944425 Cme08g02297 Cme-Chr8:29961856 0 dispersed
Cme08g02292 Cme-Chr8:29944425 Cme08g02293 Cme-Chr8:29948604 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02292 K10775 - csv:101219091 1310.43