Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02293 ATGGCACCGATTGAGACCATATGCAAGAGCTTCACTCATGATCCACTCAATTGGGGTGTGGCAGCCGAGTCCCTCAAGGGAAGCCATCTAGATGAGGTTAAACGTATGGTGGAGGAGTACCGAAGGCCCCTTGTGAAGCTTGGTGGTGAAACCCTCACCATTTCTCAAGTAGCTGCTATTGCTACTCGGGATATTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCAGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGCACTGATAGTTATGGAGTTACTACTGGTTTTGGTGCTACCTCTCACAGGAGGACAAAACAAGGTGGGGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTCGGAAATGGTGTTGAGTCGAGTCATACTTTGTCTCGTTCAGCTACAAGAGCAGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGTTACTCAGGTATAAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACCATAACATCACTCCATGTTTGCCTCTTCGTGGCACAATTACTGCTTCTGGCGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGCCGACCGAATTCTAAAGCTGTTGGTCCAAATGAAGAAAGCCTTGATGCAAATGAGGCTTTCCAACGAGCTGGTATTCCTTCTGGATTCTTTGAGTTGCAACCAAAGGAAGGTCTTGCTCTTGTCAATGGTACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTAGCTATCTTATCTGAAATTTTGTCAGCTATTTTTGCTGAAGTAATGCAAGGAAAGCCTGAATTTACTGACCATTTAACCCATAAATTGAAGCATCATCCTGGACAGATTGAAGCAGCCGCAATCATGGAACACATTTTAGATGGGAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTTCAAAAGCCCAAACAAGATCGTTACGCTCTTAGAACTTCACCGCAATGGTTGGGTCCATTGATTGAAGTTATTAGGTTCTCAACAAAGTCTATAGAGCGTGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCTTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGACTTCTACAACAATGGTTTACCTTCTAATCTTTCTGCAAGTAGAAACCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATATTGCTCTGAACTTCAATATCTTGCAAATCCAGTCACAAGTCATGTCCAAAGTGCCGAACAACACAACCAAGACGTCAACTCTCTTGGCTTGATTTCTTCAAGAAAAACAGCCGAAGCCATCGATATTTTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAATCTCAAGAGCACTGTTAAAACTACTGTAAGCCAAGTAGCAAAGAAAGTTTTGACCACAACCTTCAACGGTGGACTTCACCCGTCGAGATTTTGTGAGAAAGACTTATTAAGGGTTGTTGACAGAGAGTATACTTTTGCCTATATAGATGATCCATGTAGTGCCATTTACCCACTAATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAATGGTGATGACGAAAAGAACACAAATACTTCAATCTTCCAAAAGATTGCTACTTTTGAAGAGGAACTTAAGGTTAACTTACAAGAAAATCATTAG 1872 41.77 MAPIETICKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDIDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGVESSHTLSRSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNEESLDANEAFQRAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKTTVSQVAKKVLTTTFNGGLHPSRFCEKDLLRVVDREYTFAYIDDPCSAIYPLMQKLRQVLVEHALANGDDEKNTNTSIFQKIATFEEELKVNLQENH 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29948604 29951270 + MELO3C014223.2.1 Cme08g02293 336556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02293 623 CDD PAL-HAL 50 515 IPR001106 -
Cme08g02293 623 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 8 620 - -
Cme08g02293 623 Gene3D Fumarase/aspartase (Central domain) 252 517 - -
Cme08g02293 623 Gene3D - 6 251 IPR024083 -
Cme08g02293 623 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 621 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme08g02293 623 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Cme08g02293 623 PANTHER HISTIDINE AMMONIA-LYASE 8 620 IPR001106 -
Cme08g02293 623 SUPERFAMILY L-aspartase-like 14 620 IPR008948 GO:0003824
Cme08g02293 623 Gene3D - 518 621 IPR023144 -
Cme08g02293 623 Pfam Aromatic amino acid lyase 52 525 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02293 Cme-Chr8:29948604 Cme08g02298 Cme-Chr8:29972621 0 dispersed
Cme08g02292 Cme-Chr8:29944425 Cme08g02293 Cme-Chr8:29948604 0 tandem
Cme08g02293 Cme-Chr8:29948604 Cme08g02294 Cme-Chr8:29952626 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02293 K10775 - csv:101218856 1173.3