Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02294 ATGGCACCTGCCCAATTGGAACAATTTGCTCACCAAAATGGGTCGATGGAGAGCTTTTGCACAAGCCATGTTGTTGATCCACTCAATTGGGGTGTGGCGGCTGAGGCTCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGGATGGTGGATGAGTATAGAAGGCCTGTTGTGAAGCTTGGGGGCGAGACTCTCACCATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAGTGATGTAGTTGTGAAATTGGCTGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGAACCGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACAAAACAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGGTTTTTAAATGCTGGAATTTTTGGAAATGGAGCTGAGTCGAATCATACTTTGCCTCATTCAGCGACAAGAGCAGCCATGTTAGTGAGGATCAATACTTTGCTTCAAGGTTACTCGGGTATTCGATTTGAGATTTTGGAAGCTATTACTAATCTTCTCAATGAAAACGTTACTCCATGTTTGCCACTACGAGGAACAATTACGGCATCAGGGGATCTTGTCCCTTTGTCGTATATTGCTGGGCTACTTACGGGTCGTCCTAATTCCAAAGCCATTGGGCCTAATGGGGAAACTCTTGACGCTGAGGCTGCCTTTAAACAAGCTGGTATTCCTTCTGGGTTTTTCGAGTTACAGCCCAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTAGGTTCTGGGTTAGCTTCTATTGTCCTATTTGAGGCAAATATTCTAGCTGTTCTATCAGAAGTTCTTTCCGCTATCTTTGCTGAGGTCATGCAAGGAAAGCCTGAATACACTGATCATTTGACTCACAAGTTGAAGCATCACCCTGGTCAGATTGAAGCCGCCGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAGCAGCCAAGAAACTACATGAAATTGATCCTCTTCAAAAGCCTAAACAAGATCGCTATGCTCTTAGAACTTCACCACAATGGCTAGGGCCATTGATTGAAGTAATTCGATTTTCCACCAAATCTATTGAGCGAGAGATTAACTCAGTTAATGACAATCCATTGATTGATGTTTCAAGAAACAAGGCTTTGCACGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGATAACACTCGTTTGGCCATTGCTTCAATTGGCAAGCTCATGTTTGCCCAATTTTCCGAACTTGTGAATGATTTTTATAACAACGGTTTGCCTTCTAACCTTTCTGGAAGTAGAAACCCTAGCCTAGATTATGGGTTTAAAGGAGCTGAAATTGCAATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAACCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAATCAAGATGTTAATTCTCTTGGCTTAATTTCTTCAAGAAAAACAGCAGAAGCCATCGATATCTTGAAACTCATGTCATCCACATTTTTGGTTGCACTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGTCAAGTAGCAAAAAAGGTATTAACCACATCCTCCAATGGCACACTACACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTCGTTGACAGAGAATACACATTCGCATACATTGATGATCCATGCAGTGCTACTTATCCATTGATGCAAAAATTGAGACAAGTTTTGGTTGACCATGCCCTCACCAATGGCGAAAATGAAAAAAACACGAACACTTCCATCTTCCAGAAGATTACTGCTTTTGAAGAAGAACTAAAGGTAGCTTTACCAAAGGAAGTTGAAAATGCAAGGTTGGCATATGAGAGTGGAAATTGTAAAGTTGCAAATCAGATAAAGGATTGTCGATCTTATCCATTATATAAGTTTGTGAGAGAAGACTTGGGAACAAAACTATTGACCGGAGAAAGAGTGATATCTCCAGGAGAAGAATGTGAGAAGGTATTCACAGCTTTATGTCAAGGAAAGATGATCGACTCTATCATGGAGTGCTTAAAAGAGTGGAACGGGGCTCCTATTCCTATATGTTAG 2154 41.88 MAPAQLEQFAHQNGSMESFCTSHVVDPLNWGVAAEALKGSHLDEVKRMVDEYRRPVVKLGGETLTISQVAAIATRDSDVVVKLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITNLLNENVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGETLDAEAAFKQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEYTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVDHALTNGENEKNTNTSIFQKITAFEEELKVALPKEVENARLAYESGNCKVANQIKDCRSYPLYKFVREDLGTKLLTGERVISPGEECEKVFTALCQGKMIDSIMECLKEWNGAPIPIC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29952626 29955024 + MELO3C014224.2.1 Cme08g02294 336557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02294 717 CDD PAL-HAL 62 527 IPR001106 -
Cme08g02294 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Cme08g02294 717 Gene3D - 530 651 IPR023144 -
Cme08g02294 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Cme08g02294 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 22 717 - -
Cme08g02294 717 Gene3D - 17 263 IPR024083 -
Cme08g02294 717 PANTHER HISTIDINE AMMONIA-LYASE 22 717 IPR001106 -
Cme08g02294 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Cme08g02294 717 Pfam Aromatic amino acid lyase 64 540 IPR001106 -
Cme08g02294 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01985 Cme-Chr7:24974358 Cme08g02294 Cme-Chr8:29952626 0 dispersed
Cme07g01986 Cme-Chr7:24978998 Cme08g02294 Cme-Chr8:29952626 0 dispersed
Cme08g02294 Cme-Chr8:29952626 Cme08g02297 Cme-Chr8:29961856 0 dispersed
Cme08g02293 Cme-Chr8:29948604 Cme08g02294 Cme-Chr8:29952626 0 tandem
Cme08g02294 Cme-Chr8:29952626 Cme08g02295 Cme-Chr8:29957701 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02294 K10775 - csv:101222092 1392.1