Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02296 ATGGACAACACTCGATTGGCCATTGCATCTATAGGGAAGCTCATGTTTGCTCAATTTTCGGAACTTGTCAATGATTTCTACAACAATGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGATTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGTAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAATCAAGATGTTAACTCTTTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCGTCTACATTTTTAGTTGCTCTATGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACCGTGAAAACCACAGTTAGCCAAATGGCCAAGAAAGTATTGACCATATCCTCTAATGAGACACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTCGAAAGAGAGTACACATTTTCTTATATCGATGATCTATGCAGTGCTACTTACCCATTGAGTCAAAAGTTAAGGCAAGTTCTCGTTGAACATGCACTCACAAATGGTGATAATGAAAAGGTTGCAGACACTTCAATCTTCCAAAAGATTGCTTCTTTCGAGGAGGAACTAAAGGCAATATTACCAAAAGAAGTTGAAAATGCAAGGTTAGCCTATAAGAGCGGAAATTCTAAAATTAAAAATCAAGTCAAGAATTGTAGATCATATCCCTTGTACAGATTTGTGAGAGAAGAGTTGAAAACAAAAATGCTAACAGGAGAAAAGGTGATATCTCCGGGAGAAGAGTGTGATAAAGTATTCACAGATTTGTGTCAAGGCAAGATGATAGACTCGATATTAGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCGATTTGCTAA 927 38.19 MDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLVNPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKTTVSQMAKKVLTISSNETLHPSRFCEKDLLKVVEREYTFSYIDDLCSATYPLSQKLRQVLVEHALTNGDNEKVADTSIFQKIASFEEELKAILPKEVENARLAYKSGNSKIKNQVKNCRSYPLYRFVREELKTKMLTGEKVISPGEECDKVFTDLCQGKMIDSILECLKEWNGAPIPIC 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29958916 29959842 + MELO3C014226.2.1 Cme08g02296 336559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02296 308 SUPERFAMILY L-aspartase-like 1 308 IPR008948 GO:0003824
Cme08g02296 308 Gene3D Fumarase/aspartase (Central domain) 232 308 - -
Cme08g02296 308 Pfam Aromatic amino acid lyase 1 126 IPR001106 -
Cme08g02296 308 Gene3D Fumarase/aspartase (Central domain) 1 183 - -
Cme08g02296 308 PANTHER PHENYLALANINE AMMONIA-LYASE 1 308 - -
Cme08g02296 308 PANTHER HISTIDINE AMMONIA-LYASE 1 308 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02296 Cme-Chr8:29958916 Cme07g01985 Cme-Chr7:24974358 0 dispersed
Cme08g02296 Cme-Chr8:29958916 Cme08g02297 Cme-Chr8:29961856 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02296 K10775 - csv:101218617 578.941