Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02297 ATGGCTTCTTTTCAAAACATTGAAGACAACTTGTGTCATACCCATAGTGATCCACTCAATTGGGGGGTGGCTGCCGAGGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGAAGGCCTCTTGTTAAGCTTGGAGGTGAAACTCTTACTATTTCTCAGGTGGCTGCCATTGCTACTAGAGACACTGATGTTATTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAAAGCATGAATAAAGGGACTGATAGTTATGGTGTTACAACTGGATTTGGTGCTACTTCTCATAGAAGGACCAAACAAGGTGGTGCTCTCCAAAAGGAGTTGATTAGATTTTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCAAACCATACTTTGCCTCACTCCGCTACGAGGGCCGCGATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAACTCTTGAACAATAATATCACTCCTTGCTTGCCACTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGACTACTCACTGGCCGACCAAATTCTAAAGCTATTGGTCCAAACGGAGAAAATTTTGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCAAAGGAAGGGTTGGCACTTGTTAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATCGTTCTTTTTGAAGCAAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATCTTTGCTGAAGTTATGCAAGGCAAGCCCGAATTTACTGATCATTTGACCCATAAGTTAAAGCATCATCCGGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCTAAACAAGATCGCTATGCCCTTCGCACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGCAACTTCCAAGGGACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCCATTGCTTCAATTGGAAAGCTTCTTTTTGCTCAATTTTCAGAGCTTGCCAATGATTTCTATAATAATGGGCTACCCTCAAATCTATCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTCCAATATCTTGCAAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTGAACTCTCTTGGTTTAATCTCATCGAGGAAAACAGCTGAGGCAATTGATATTTTGAAGCTCATGTCTGCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGCACACAGTTAAAAATACAGTAAGTCAAGTGGCGAAGAAAGTCCTTACCACTAGCTCTAATGGCACGCTTCATCCATCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGGGAATACGCCTTTGCTTATATTGACGATCCATGCAGTGCTACTTATCCATTGATGCAAAAGTTGAGGCAAGTTATTGTCGAACATGCTTTAAATAACGGAGAGGGTGAGAAAGACCTAGCTACTTCAATCTTTCAAAAAATTGGGACATTTGAAGAGGAATTGAAGACTGTTCTACCCAAAGAAGTGGAAAGCGTAAGGTTGGCTTATGAAAATGGAGATGCCACCATTGAGAACCAAATCAAGGAATGCAGATCTTACCCACTATATAAGTTTGTGAGAGAAGAGTTGGGCACTAAATTGCTAACTGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGTGAAAAAGTTTTCACTGCATTATGCCAAGGAAAGATGATCGACCCAATTTTGGAATGCTTGAAGGAATGGAATGGCGCTCCAATTCCTATATGCTAA 2127 42.31 MASFQNIEDNLCHTHSDPLNWGVAAEALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDTDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGENFDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELANDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSATFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYAFAYIDDPCSATYPLMQKLRQVIVEHALNNGEGEKDLATSIFQKIGTFEEELKTVLPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29961856 29964204 - MELO3C014227.2.1 Cme08g02297 336560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02297 708 Gene3D - 8 254 IPR024083 -
Cme08g02297 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 13 708 - -
Cme08g02297 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme08g02297 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cme08g02297 708 CDD PAL-HAL 53 518 IPR001106 -
Cme08g02297 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Cme08g02297 708 Pfam Aromatic amino acid lyase 55 529 IPR001106 -
Cme08g02297 708 Gene3D - 521 642 IPR023144 -
Cme08g02297 708 PANTHER HISTIDINE AMMONIA-LYASE 13 708 IPR001106 -
Cme08g02297 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02292 Cme-Chr8:29944425 Cme08g02297 Cme-Chr8:29961856 0 dispersed
Cme08g02294 Cme-Chr8:29952626 Cme08g02297 Cme-Chr8:29961856 0 dispersed
Cme08g02295 Cme-Chr8:29957701 Cme08g02297 Cme-Chr8:29961856 0 dispersed
Cme08g02297 Cme-Chr8:29961856 Cme08g02299 Cme-Chr8:29979729 0 dispersed
Cme08g02296 Cme-Chr8:29958916 Cme08g02297 Cme-Chr8:29961856 0 tandem
Cme08g02297 Cme-Chr8:29961856 Cme08g02298 Cme-Chr8:29972621 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02297 K10775 - csv:101218382 1370.53