Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02298 ATGGCACCCATTGATCAAACAAATGACAGCAGCCTTTGCACCATTACTGCTCATCCCGACCCACTCAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTAGAAGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACTATTTCTCAGGTGGCTGCCATTGCTACTAGGGACACTGATGTTATTGTTGAGCTTTCTGAATCTGCTAGAGCCGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACTTCTCATAGAAGGACCAAGCAAGGTGGTGCTCTCCAAAAGGAGTTGATTAGATTTTTGAATGCCGGGATCTTTGGAAGTGGAGCTGAGTCAAACCATATTTTGCCTCACTCGGCTACGAGGGCCGCGATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAACTCTTGAACAATAATATCACTCCTTGCTTGCCACTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGCCGACCAAATTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCAAAAGAAGCTTTCCAACAAGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCAAAGGAAGGGCTAGCTCTTGTCAATGGCACTGCTGTTGGGTCTGGGTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTGGCTGTTTTGTCTGAGATTTTATCTGCCATCTTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGATCATTTGACCCATAAGTTAAAGCATCATCCGGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTTCAAAAGCCTAAACAAGATCGCTATGCCCTTCGCACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGCAACTTCCAAGGGACTCCAATTGGAGTCTCCATGGACAACACTCGTCTTGCCATTGCTTCAATTGGAAAGCTTCTTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTATAATAATGGGCTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCAATGGCTTCATATTGCTCTGAGCTCCAATACCTAGCAAATCCTGTTACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCTGAGGCCATTGACATTCTAAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACTTGAAGAATGTAGTGAAGAGCACAGTAAGTCAAGTGGCCAAGAAAGTTCTCACCACAGGTGTTAACGGTGCACTTCATCCATCAAGATTTTGTGAAAAAGATTTACTAAAAGTAGTTGACAGAGAATATACGTTTGCCTATGTCGATGACGCATGCAGTGCCACTTATCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTTTGGAAAATGGTGAAGATGAAAAGGATGCAAGCACTTCCATTTTTCAAAAAATTAGAGCTTTCGAGGAGGAATTGAAAGCTATCTTGCCGAAAGAAGTAGAAAATGCAAGATTGTCATATGAAAATGGAACATCCACAATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTGTACAAGTTCGTGAGGGAGGAGTTGGGAACTGGATTGTTGACTGGAGAGAAGGTGATATCTCCAGGAGAAGAGTGCGAAAAGGTATTCACGGCTCTTTGCCAAGGAAAGATGATCGACCCAATTTTAGAGTGTTTGAAGGAATGGAATGGTGCTCCAATCCCCATCTGCTAG 2136 42.28 MAPIDQTNDSSLCTITAHPDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDTDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESNHILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKSTVSQVAKKVLTTGVNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALENGEDEKDASTSIFQKIRAFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 711
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 29972621 29975113 - MELO3C014228.2.1 Cme08g02298 336561
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02298 711 PANTHER HISTIDINE AMMONIA-LYASE 16 711 IPR001106 -
Cme08g02298 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Cme08g02298 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme08g02298 711 CDD PAL-HAL 56 521 IPR001106 -
Cme08g02298 711 Gene3D - 524 645 IPR023144 -
Cme08g02298 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824
Cme08g02298 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
Cme08g02298 711 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 711 - -
Cme08g02298 711 Pfam Aromatic amino acid lyase 58 531 IPR001106 -
Cme08g02298 711 Gene3D - 12 257 IPR024083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02293 Cme-Chr8:29948604 Cme08g02298 Cme-Chr8:29972621 0 dispersed
Cme08g02298 Cme-Chr8:29972621 Cme11g01812 Cme-Chr11:26303336 0 dispersed
Cme08g02297 Cme-Chr8:29961856 Cme08g02298 Cme-Chr8:29972621 0 tandem
Cme08g02298 Cme-Chr8:29972621 Cme08g02299 Cme-Chr8:29979729 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02298 K10775 - csv:101218144 1372.84